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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS20085 and DZA65_RS20090 overlap by 8 nucleotides
DZA65_RS20090 and DZA65_RS20095 overlap by 1 nucleotides
DZA65_RS20095 and DZA65_RS20100 are separated by 1 nucleotides
DZA65_RS20100 and DZA65_RS20105 are separated by 83 nucleotides
DZA65_RS20085: DZA65_RS20085 - thioesterase, at 4,353,107 to 4,353,820
_RS20085
DZA65_RS20090: DZA65_RS20090 - DMT family transporter, at 4,353,813 to 4,354,733
_RS20090
DZA65_RS20095: DZA65_RS20095 - alanyl-tRNA synthetase, at 4,354,733 to 4,355,407
_RS20095
DZA65_RS20100: DZA65_RS20100 - chlorinating enzyme, at 4,355,409 to 4,356,368
_RS20100
DZA65_RS20105: DZA65_RS20105 - acyl carrier protein, at 4,356,452 to 4,356,718
_RS20105
Group
Condition
DZA65
_RS20085
DZA65
_RS20090
DZA65
_RS20095
DZA65
_RS20100
DZA65
_RS20105
plant
Stem-Upstate
-0.1
-0.5
-0.3
+0.3
-1.6
plant
Stem-Upstate
-0.1
-0.3
-0.2
+0.1
-1.2
plant
Stem-Norland
-0.1
+0.0
-0.5
+0.2
-1.1
carbon source
M9+glycerol
-0.1
-0.0
-0.1
-0.2
-0.7
plant
Stem-Atlantic
+0.1
-0.2
+0.0
+0.0
-1.0
plant
Norland
-0.0
-0.0
-0.2
-0.1
-0.4
plant
Atlantic
+0.1
-0.0
-0.3
+0.0
-0.5
plant
Atlantic
-0.1
-0.0
-0.4
+0.1
-0.3
plant
Atlantic
+0.0
+0.1
-0.2
-0.2
-0.5
plant
Stem-Norland
+0.1
-0.2
-0.4
+0.3
-0.3
plant
Stem-Upstate
-0.1
-0.1
+0.2
+0.2
-0.7
plant
Stem-Norland
-0.1
-0.0
+0.2
-0.2
-0.2
control
PDB
-0.1
-0.0
+0.3
-0.1
-0.1
control
LB
+0.1
-0.2
-0.2
-0.0
+0.3
control
LB
+0.0
-0.1
+0.3
-0.0
-0.3
carbon source
M9+polygalacturonate
+0.0
-0.0
-0.1
-0.2
+0.3
plant
Stem-Norland
-0.0
+0.1
-0.3
+0.1
+0.1
plant
Stem-Upstate
+0.0
+0.2
+0.4
+0.1
-0.7
plant
Stem-Norland
-0.0
-0.2
-0.1
+0.3
+0.1
plant
Stem-Atlantic
+0.1
-0.1
+0.4
-0.1
-0.2
plant
Stem-Atlantic
-0.0
+0.1
+0.5
-0.1
-0.2
control
LB
-0.0
-0.1
-0.2
+0.0
+0.5
plant
Norland
-0.1
+0.1
+0.1
-0.1
+0.2
plant
Stem-Atlantic
+0.1
-0.2
+0.1
+0.1
+0.3
plant
Stem-Upstate
+0.2
-0.3
-0.2
+0.1
+0.6
control
LB
-0.1
-0.1
+0.3
+0.1
+0.4
plant
Atlantic
+0.0
+0.0
-0.0
-0.1
+0.5
plant
Stem-Upstate
+0.1
+0.2
-0.1
-0.0
+0.7
plant
Stem-Upstate
+0.1
-0.1
+0.0
+0.4
+0.5
plant
Stem-Norland
-0.0
+0.2
+0.6
+0.4
+0.6
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