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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS19650 and DZA65_RS19655 are separated by 104 nucleotides
DZA65_RS19655 and DZA65_RS19660 are separated by 99 nucleotides
DZA65_RS19660 and DZA65_RS19665 are separated by 60 nucleotides
DZA65_RS19665 and DZA65_RS19670 are separated by 3 nucleotides
DZA65_RS19650: DZA65_RS19650 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 4,254,368 to 4,255,750
_RS19650
DZA65_RS19655: DZA65_RS19655 - adenylosuccinate synthase, at 4,255,855 to 4,257,153
_RS19655
DZA65_RS19660: DZA65_RS19660 - DUF2065 domain-containing protein, at 4,257,253 to 4,257,453
_RS19660
DZA65_RS19665: DZA65_RS19665 - protease modulator HflC, at 4,257,514 to 4,258,509
_RS19665
DZA65_RS19670: DZA65_RS19670 - FtsH protease activity modulator HflK, at 4,258,513 to 4,259,775
_RS19670
Group
Condition
DZA65
_RS19650
DZA65
_RS19655
DZA65
_RS19660
DZA65
_RS19665
DZA65
_RS19670
plant
Stem-Atlantic
+0.1
-3.7
-0.2
-1.8
-3.2
plant
Stem-Norland
+0.1
-4.2
-0.2
-2.5
-2.0
plant
Stem-Upstate
-0.1
-4.4
-0.0
-1.7
-1.7
plant
Stem-Norland
+0.0
-3.0
-0.3
-2.1
-1.8
plant
Stem-Norland
-0.4
-3.2
-0.1
-1.4
-2.0
plant
Stem-Atlantic
-0.0
-3.9
-0.0
-1.5
-1.2
plant
Stem-Upstate
-0.2
-0.8
-0.1
-2.0
-3.1
plant
Stem-Atlantic
+0.1
-3.9
-0.0
-1.0
-1.5
plant
Stem-Atlantic
-0.1
-3.2
-0.3
-1.0
-1.7
plant
Stem-Norland
-0.1
-4.5
-0.1
-0.6
-0.9
plant
Stem-Norland
+0.1
-2.9
+0.2
-1.7
-1.6
plant
Stem-Upstate
-0.2
-2.7
+0.4
-1.1
-2.3
plant
Stem-Atlantic
-0.0
-3.6
-0.0
-1.2
-0.9
plant
Stem-Norland
+0.1
-2.9
-0.1
-1.5
-0.8
plant
Stem-Atlantic
+0.1
-2.1
-0.2
-1.0
-2.0
plant
Stem-Upstate
+0.0
-1.7
+0.3
-1.6
-1.9
plant
Stem-Upstate
+0.0
-0.9
-0.1
-2.1
-1.7
plant
Norland
+0.2
-3.4
-0.0
-1.4
-0.1
plant
Stem-Upstate
-0.4
-1.2
+0.2
-1.8
-1.4
plant
Stem-Norland
+0.0
-3.2
-0.2
+0.0
-1.0
plant
Stem-Atlantic
-0.0
-2.9
-0.4
+0.1
-1.0
plant
Atlantic
+0.2
-1.8
+0.0
-1.2
-1.2
control
PDB
-0.0
-2.9
+0.1
-0.1
-0.6
carbon source
M9+glycerol
+0.2
-2.7
-0.0
-0.8
-0.1
carbon source
M9+glycerol
+0.2
-2.5
+0.1
-0.4
-0.7
carbon source
M9+sucrose
+0.0
-3.2
+0.2
+0.1
+0.0
carbon source
M9+polygalacturonate
+0.2
-3.5
+0.1
+0.2
+1.0
carbon source
M9+sucrose
+0.3
-2.6
+0.0
+0.5
+0.3
carbon source
M9+polygalacturonate
-0.1
-2.4
+0.1
+0.3
+0.8
control
PDB
+0.0
-1.3
+0.3
+1.3
+1.3
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