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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS18915 and DZA65_RS18920 are separated by 24 nucleotides
DZA65_RS18920 and DZA65_RS18925 overlap by 8 nucleotides
DZA65_RS18925 and DZA65_RS18930 are separated by 214 nucleotides
DZA65_RS18930 and DZA65_RS18935 are separated by 97 nucleotides
DZA65_RS18915: DZA65_RS18915 - DeoR/GlpR transcriptional regulator, at 4,085,259 to 4,086,089
_RS18915
DZA65_RS18920: DZA65_RS18920 - D-threonate 4-phosphate dehydrogenase, at 4,086,114 to 4,087,094
_RS18920
DZA65_RS18925: DZA65_RS18925 - four-carbon acid sugar kinase family protein, at 4,087,087 to 4,088,373
_RS18925
DZA65_RS18930: DZA65_RS18930 - iron-containing alcohol dehydrogenase, at 4,088,588 to 4,089,724
_RS18930
DZA65_RS18935: DZA65_RS18935 - dihydrodipicolinate synthase family protein, at 4,089,822 to 4,090,706
_RS18935
Group
Condition
DZA65
_RS18915
DZA65
_RS18920
DZA65
_RS18925
DZA65
_RS18930
DZA65
_RS18935
plant
Stem-Norland
-2.2
-0.7
-0.1
+0.1
-0.0
plant
Stem-Norland
-0.8
-1.1
-0.4
-0.3
+0.3
plant
Stem-Norland
-1.5
-0.2
-0.1
-0.1
-0.2
plant
Stem-Norland
-1.1
-0.4
-0.3
+0.2
-0.4
plant
Stem-Upstate
-0.9
-0.4
+0.0
-0.4
-0.2
plant
Stem-Upstate
-0.9
+0.1
-0.2
-0.6
-0.2
control
LB
-0.5
-1.0
-0.1
-0.0
-0.0
plant
Norland
-0.6
-0.7
-0.1
-0.2
+0.0
stress
1.88mM_PTB
-0.7
-1.2
+0.0
+0.0
+0.2
plant
Stem-Norland
-1.0
-0.3
-0.2
+0.1
-0.2
plant
Stem-Upstate
-0.5
-0.9
+0.1
-0.1
-0.2
control
LB
-0.7
-0.6
+0.1
-0.2
-0.1
control
PDB
-0.6
-0.7
-0.2
-0.0
-0.1
plant
Upstate
-0.4
-0.7
-0.2
-0.2
-0.0
carbon source
M9+polygalacturonate
-0.5
-1.0
+0.1
+0.1
-0.1
control
PDB
-0.7
-0.4
+0.0
-0.1
-0.2
stress
3.75mM_PTB
-0.4
-1.2
+0.1
-0.0
+0.1
plant
Stem-Atlantic
-1.2
+0.1
+0.0
-0.2
-0.2
control
LB
-0.4
-1.0
-0.0
+0.0
+0.1
plant
Norland
-0.8
-0.4
+0.1
-0.1
-0.1
plant
Norland
-0.4
-0.7
-0.0
-0.2
+0.1
plant
Stem-Atlantic
-0.5
-0.5
+0.2
-0.1
-0.2
plant
Stem-Upstate
-1.3
+0.6
+0.6
-0.5
-0.5
stress
1.88mM_PTB
-0.4
-0.8
+0.1
+0.2
-0.0
control
LB
-0.4
-0.8
-0.1
+0.2
+0.1
plant
Stem-Atlantic
-0.5
-0.7
+0.2
-0.2
+0.3
carbon source
M9+sucrose
+0.2
-1.0
-0.1
+0.1
+0.2
plant
Stem-Atlantic
-0.6
+0.2
+0.5
-0.1
-0.2
plant
Stem-Norland
-0.9
+0.5
+0.5
+0.1
-0.4
plant
Stem-Upstate
-0.4
+0.3
+0.2
+0.2
+0.4
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