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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS18895 and DZA65_RS18900 overlap by 4 nucleotides
DZA65_RS18900 and DZA65_RS18905 are separated by 42 nucleotides
DZA65_RS18905 and DZA65_RS18910 are separated by 210 nucleotides
DZA65_RS18910 and DZA65_RS18915 are separated by 137 nucleotides
DZA65_RS18895: DZA65_RS18895 - ABC transporter ATP-binding protein, at 4,081,835 to 4,082,572
_RS18895
DZA65_RS18900: DZA65_RS18900 - metal ABC transporter permease, at 4,082,569 to 4,083,423
_RS18900
DZA65_RS18905: DZA65_RS18905 - metal ABC transporter substrate-binding protein, at 4,083,466 to 4,084,344
_RS18905
DZA65_RS18910: DZA65_RS18910 - TIGR00730 family Rossman fold protein, at 4,084,555 to 4,085,121
_RS18910
DZA65_RS18915: DZA65_RS18915 - DeoR/GlpR transcriptional regulator, at 4,085,259 to 4,086,089
_RS18915
Group
Condition
DZA65
_RS18895
DZA65
_RS18900
DZA65
_RS18905
DZA65
_RS18910
DZA65
_RS18915
control
LB
-0.6
-0.3
+0.1
-0.4
-0.7
plant
Stem-Norland
-0.5
+0.0
+0.2
+0.1
-1.5
plant
Stem-Atlantic
-0.1
-0.2
-0.1
-0.1
-1.2
carbon source
M9+sucrose
-0.9
-0.3
-0.1
-0.2
-0.2
plant
Stem-Norland
-0.4
+0.1
-0.1
-0.2
-1.0
carbon source
M9+polygalacturonate
-0.8
-0.0
+0.1
-0.2
-0.4
plant
Stem-Upstate
-0.2
-0.5
+0.1
+0.1
-0.9
plant
Stem-Upstate
-0.5
-0.3
+0.2
-0.2
-0.5
plant
Stem-Norland
-0.7
-0.2
+0.2
+0.3
-0.9
stress
1.88mM_PTB
+0.1
-0.3
+0.0
-0.3
-0.7
stress
1.88mM_PTB
-0.3
-0.6
+0.2
+0.0
-0.4
plant
Stem-Norland
+0.5
+0.3
+0.3
-0.0
-2.2
plant
Stem-Upstate
-0.3
+0.2
-0.0
-0.1
-0.9
stress
3.75mM_PTB
-0.3
-0.5
-0.1
+0.2
-0.4
plant
Stem-Upstate
-0.3
+0.0
+0.5
-0.7
-0.4
plant
Upstate
+0.2
-0.0
+0.2
-0.3
-0.8
plant
Stem-Atlantic
-0.5
+0.3
+0.2
+0.2
-0.9
plant
Stem-Norland
+0.2
+0.2
+0.0
+0.0
-1.1
plant
Stem-Upstate
-0.2
+0.5
+0.0
+0.3
-1.3
plant
Upstate
+0.1
+0.3
+0.1
-0.3
-0.8
plant
Stem-Atlantic
-0.3
-0.0
-0.1
+0.5
-0.5
control
PDB
+0.3
+0.2
+0.1
-0.4
-0.7
plant
Upstate
+0.1
+0.4
+0.2
-0.1
-0.8
plant
Stem-Atlantic
-0.0
+0.0
+0.3
+0.3
-0.6
plant
Stem-Upstate
+1.0
-0.1
+0.1
-0.2
-0.7
plant
Norland
+0.5
+0.0
+0.0
+0.2
-0.6
plant
Atlantic
+0.5
+0.3
+0.1
-0.1
-0.4
plant
Stem-Norland
+0.6
-0.1
+0.4
+0.3
-0.9
plant
Norland
+0.3
+0.4
+0.1
+0.7
-0.7
plant
Stem-Atlantic
+0.3
+0.1
+0.4
+0.4
-0.4
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