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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS18545 and DZA65_RS18550 are separated by 15 nucleotides
DZA65_RS18550 and DZA65_RS18555 are separated by 112 nucleotides
DZA65_RS18555 and DZA65_RS18560 are separated by 59 nucleotides
DZA65_RS18560 and DZA65_RS18565 are separated by 120 nucleotides
DZA65_RS18545: DZA65_RS18545 - LacI family transcriptional regulator, at 3,996,373 to 3,997,383
_RS18545
DZA65_RS18550: DZA65_RS18550 - diaminopimelate decarboxylase, at 3,997,399 to 3,998,661
_RS18550
DZA65_RS18555: DZA65_RS18555 - LysR family transcriptional regulator, at 3,998,774 to 3,999,721
_RS18555
DZA65_RS18560: DZA65_RS18560 - Fic family protein, at 3,999,781 to 4,001,121
_RS18560
DZA65_RS18565: DZA65_RS18565 - ABC transporter ATP-binding protein, at 4,001,242 to 4,002,234
_RS18565
Group
Condition
DZA65
_RS18545
DZA65
_RS18550
DZA65
_RS18555
DZA65
_RS18560
DZA65
_RS18565
plant
Stem-Upstate
-1.0
-3.0
-1.8
+0.0
+0.2
plant
Stem-Upstate
-0.2
-2.4
-1.5
-0.1
-1.2
plant
Stem-Norland
-0.3
-2.0
-2.1
-0.0
+0.3
plant
Stem-Upstate
-0.3
-2.5
-0.7
-0.1
-0.4
plant
Stem-Upstate
-0.6
-2.6
-0.8
-0.1
+0.4
plant
Stem-Norland
-0.1
-1.9
-1.7
+0.2
-0.0
carbon source
M9+polygalacturonate
-0.5
-2.4
-0.7
+0.0
+0.1
plant
Stem-Atlantic
-0.5
-2.3
-0.7
-0.1
+0.1
plant
Stem-Atlantic
-0.4
-2.6
-1.2
+0.2
+0.4
plant
Stem-Upstate
-0.6
-2.1
-0.5
-0.2
-0.0
carbon source
M9+polygalacturonate
-0.3
-2.3
-0.7
-0.1
+0.2
plant
Stem-Norland
-0.6
-2.2
-0.7
+0.1
+0.3
plant
Stem-Norland
-0.2
-1.9
-0.8
-0.0
-0.2
plant
Stem-Norland
-0.5
-1.6
-0.7
-0.2
-0.0
carbon source
M9+polygalacturonate
-0.4
-2.0
-0.5
+0.0
-0.1
carbon source
M9+sucrose
-0.0
-2.3
-0.3
-0.0
-0.2
carbon source
M9+sucrose
-0.1
-2.4
-0.3
-0.0
-0.0
carbon source
M9+glycerol
-0.0
-2.1
-0.7
+0.0
+0.1
carbon source
M9+glycerol
-0.1
-1.9
-0.5
+0.0
-0.1
carbon source
M9+starch
-0.1
-1.8
-0.2
-0.2
-0.3
plant
Stem-Upstate
-0.1
-1.4
-0.4
-0.3
-0.3
carbon source
M9+sucrose
-0.4
-2.3
+0.1
+0.1
+0.1
plant
Stem-Upstate
-0.2
-1.5
-0.6
-0.0
-0.0
carbon source
M9+glycerol
-0.1
-1.8
-0.1
-0.2
-0.1
plant
Upstate
+0.1
-1.6
-0.6
+0.1
-0.3
carbon source
M9+glycerol
+0.0
-2.0
-0.5
+0.0
+0.1
carbon source
M9+glycerol
-0.4
-2.2
+0.1
+0.1
+0.2
plant
Stem-Atlantic
-0.3
-1.4
-0.7
+0.1
+0.0
plant
Stem-Atlantic
-0.2
-1.1
-1.1
+0.1
+0.2
plant
Atlantic
+0.2
-1.3
-0.5
+0.3
-0.3
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