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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS18450 and DZA65_RS18455 are separated by 46 nucleotides
DZA65_RS18455 and DZA65_RS18460 overlap by 8 nucleotides
DZA65_RS18460 and DZA65_RS18465 are separated by 176 nucleotides
DZA65_RS18465 and DZA65_RS18470 are separated by 52 nucleotides
DZA65_RS18450: DZA65_RS18450 - YggU family protein, at 3,976,298 to 3,976,588
_RS18450
DZA65_RS18455: DZA65_RS18455 - XTP/dITP diphosphatase, at 3,976,635 to 3,977,228
_RS18455
DZA65_RS18460: DZA65_RS18460 - radical SAM family heme chaperone HemW, at 3,977,221 to 3,978,360
_RS18460
DZA65_RS18465: DZA65_RS18465 - entericidin A/B family lipoprotein, at 3,978,537 to 3,978,665
_RS18465
DZA65_RS18470: DZA65_RS18470 - GNAT family N-acetyltransferase, at 3,978,718 to 3,979,173
_RS18470
Group
Condition
DZA65
_RS18450
DZA65
_RS18455
DZA65
_RS18460
DZA65
_RS18465
DZA65
_RS18470
plant
Stem-Norland
-0.3
-0.7
-0.3
N.D.
-0.1
plant
Stem-Atlantic
-0.3
-0.3
-0.3
N.D.
-0.4
plant
Stem-Norland
-0.2
-0.6
-0.4
N.D.
-0.0
carbon source
M9+glycerol
-0.1
-0.7
-0.2
N.D.
-0.2
plant
Stem-Atlantic
-0.0
-0.2
-0.6
N.D.
-0.3
carbon source
M9+polygalacturonate
-0.4
-0.7
+0.2
N.D.
-0.1
control
LB
-0.1
-0.6
-0.1
N.D.
-0.2
plant
Stem-Upstate
+0.0
-0.7
-0.3
N.D.
+0.0
carbon source
M9+starch
-0.2
-0.7
-0.2
N.D.
+0.2
plant
Stem-Atlantic
+0.1
-0.3
-0.4
N.D.
-0.1
carbon source
M9+glycerol
+0.2
-0.9
+0.1
N.D.
-0.1
control
LB
-0.6
-0.1
-0.1
N.D.
+0.2
plant
Stem-Atlantic
+0.3
-0.4
-0.4
N.D.
-0.1
carbon source
M9+sucrose
-0.3
-0.1
-0.2
N.D.
+0.2
plant
Atlantic
+0.2
-0.2
+0.1
N.D.
-0.6
plant
Stem-Atlantic
+0.2
+0.0
-0.6
N.D.
-0.0
plant
Atlantic
+0.4
-0.1
-0.3
N.D.
-0.1
plant
Stem-Norland
-0.3
-0.1
-0.1
N.D.
+0.4
stress
3.75mM_PTB
+0.4
-0.2
-0.1
N.D.
-0.2
plant
Stem-Norland
+0.3
+0.1
-0.3
N.D.
-0.2
plant
Upstate
+0.2
-0.2
-0.1
N.D.
+0.4
plant
Stem-Atlantic
+0.9
-0.5
+0.1
N.D.
-0.2
plant
Stem-Upstate
-0.1
+0.6
-0.3
N.D.
+0.2
plant
Stem-Upstate
+0.7
-0.3
-0.5
N.D.
+0.6
plant
Stem-Norland
+0.3
+0.5
-0.3
N.D.
+0.2
plant
Norland
+0.4
+0.5
-0.0
N.D.
-0.1
plant
Norland
+0.3
+0.6
+0.1
N.D.
-0.2
plant
Stem-Norland
+0.2
+0.5
-0.0
N.D.
+0.2
plant
Stem-Upstate
-0.2
+1.2
-0.2
N.D.
+0.1
plant
Stem-Upstate
+0.2
+0.8
+0.2
N.D.
-0.1
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