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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS18395 and DZA65_RS18400 are separated by 103 nucleotides
DZA65_RS18400 and DZA65_RS18405 are separated by 93 nucleotides
DZA65_RS18405 and DZA65_RS18410 are separated by 40 nucleotides
DZA65_RS18410 and DZA65_RS18415 are separated by 372 nucleotides
DZA65_RS18395: DZA65_RS18395 - hypothetical protein, at 3,964,430 to 3,964,705
_RS18395
DZA65_RS18400: DZA65_RS18400 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 3,964,809 to 3,965,543
_RS18400
DZA65_RS18405: DZA65_RS18405 - ribonuclease R, at 3,965,637 to 3,968,114
_RS18405
DZA65_RS18410: DZA65_RS18410 - nitric oxide-sensing transcriptional repressor NsrR, at 3,968,155 to 3,968,580
_RS18410
DZA65_RS18415: DZA65_RS18415 - HAMP domain-containing protein, at 3,968,953 to 3,970,539
_RS18415
Group
Condition
DZA65
_RS18395
DZA65
_RS18400
DZA65
_RS18405
DZA65
_RS18410
DZA65
_RS18415
plant
Stem-Upstate
-1.2
-1.5
-0.2
-0.3
+0.1
plant
Stem-Norland
-0.7
-0.9
-0.9
-0.8
+0.1
plant
Stem-Atlantic
-0.8
-1.1
-0.6
-0.5
+0.1
plant
Stem-Norland
-0.9
-0.8
-1.0
-0.2
+0.1
plant
Stem-Norland
-0.5
-0.9
-0.9
-0.4
+0.3
plant
Stem-Atlantic
-0.7
-0.9
-0.6
-0.2
+0.1
carbon source
M9+sucrose
-0.4
-0.5
-0.5
-0.6
-0.0
plant
Stem-Atlantic
-0.8
-0.6
-0.4
-0.3
+0.0
plant
Stem-Atlantic
-0.4
-0.9
-0.5
-0.4
+0.2
plant
Stem-Upstate
-0.6
-0.2
-0.5
-0.7
+0.0
plant
Upstate
-0.5
-0.6
-0.5
-0.3
-0.0
control
LB
+0.3
-1.2
-0.6
-0.4
-0.0
plant
Stem-Atlantic
-1.3
-0.6
-0.2
+0.0
+0.1
plant
Upstate
-0.4
-0.7
-0.5
-0.4
+0.1
plant
Stem-Norland
-2.2
+0.6
-0.5
+0.0
+0.2
plant
Stem-Norland
-0.3
-0.6
-0.5
-0.4
-0.1
carbon source
M9+glycerol
-0.4
-0.7
-0.1
-0.6
-0.0
carbon source
M9+polygalacturonate
-0.4
-0.4
-0.6
-0.4
+0.1
plant
Stem-Atlantic
-0.7
-0.4
-0.5
-0.4
+0.2
stress
1.88mM_PTB
+0.1
-1.1
-0.4
-0.3
+0.0
plant
Stem-Upstate
-0.9
+0.3
-0.6
-0.6
+0.2
plant
Atlantic
+0.0
-0.4
-0.8
-0.3
+0.2
plant
Stem-Atlantic
-0.8
+0.2
-0.4
-0.4
+0.2
carbon source
M9+glycerol
+0.6
-0.3
-0.5
-0.9
-0.0
plant
Stem-Upstate
-1.1
+0.4
-0.5
+0.0
+0.0
plant
Stem-Norland
-0.8
+0.5
-0.7
+0.2
-0.2
plant
Atlantic
+0.4
-0.5
-0.6
+0.0
-0.1
plant
Stem-Norland
-0.3
+0.5
-0.6
-0.4
+0.1
plant
Upstate
+0.4
-0.7
-0.5
-0.1
+0.2
plant
Stem-Upstate
-0.2
+0.6
-0.3
-0.6
+0.2
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