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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS18385 and DZA65_RS18390 are separated by 136 nucleotides
DZA65_RS18390 and DZA65_RS18395 are separated by 46 nucleotides
DZA65_RS18395 and DZA65_RS18400 are separated by 103 nucleotides
DZA65_RS18400 and DZA65_RS18405 are separated by 93 nucleotides
DZA65_RS18385: DZA65_RS18385 - methyl-accepting chemotaxis protein, at 3,961,938 to 3,963,878
_RS18385
DZA65_RS18390: DZA65_RS18390 - biofilm peroxide resistance protein BsmA, at 3,964,015 to 3,964,383
_RS18390
DZA65_RS18395: DZA65_RS18395 - hypothetical protein, at 3,964,430 to 3,964,705
_RS18395
DZA65_RS18400: DZA65_RS18400 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 3,964,809 to 3,965,543
_RS18400
DZA65_RS18405: DZA65_RS18405 - ribonuclease R, at 3,965,637 to 3,968,114
_RS18405
Group
Condition
DZA65
_RS18385
DZA65
_RS18390
DZA65
_RS18395
DZA65
_RS18400
DZA65
_RS18405
plant
Stem-Norland
-0.1
-0.1
-0.9
-0.8
-1.0
plant
Stem-Upstate
+0.3
-0.2
-1.2
-1.5
-0.2
plant
Stem-Atlantic
+0.2
-0.1
-0.8
-1.1
-0.6
plant
Stem-Norland
+0.2
-0.3
-0.5
-0.9
-0.9
plant
Stem-Norland
+0.1
+0.0
-0.7
-0.9
-0.9
plant
Stem-Norland
+0.1
-0.1
-2.2
+0.6
-0.5
plant
Stem-Atlantic
+0.2
-0.1
-0.7
-0.9
-0.6
plant
Stem-Atlantic
+0.1
+0.1
-1.3
-0.6
-0.2
plant
Stem-Atlantic
+0.2
-0.2
-0.7
-0.4
-0.5
plant
Stem-Atlantic
+0.3
-0.0
-0.4
-0.9
-0.5
plant
Stem-Norland
-0.1
+0.1
-0.3
-0.6
-0.5
plant
Upstate
+0.1
+0.1
-0.5
-0.6
-0.5
plant
Upstate
+0.2
+0.0
-0.4
-0.7
-0.5
plant
Stem-Atlantic
+0.2
+0.1
-0.8
-0.6
-0.4
carbon source
M9+sucrose
-0.0
+0.2
-0.4
-0.5
-0.5
plant
Upstate
+0.1
-0.2
-0.5
-0.4
-0.4
control
LB
+0.1
+0.1
+0.3
-1.2
-0.6
carbon source
M9+polygalacturonate
-0.0
+0.2
-0.4
-0.4
-0.6
stress
1.88mM_PTB
+0.1
+0.1
+0.1
-1.1
-0.4
plant
Stem-Norland
-0.2
+0.1
-0.8
+0.5
-0.7
plant
Upstate
+0.2
-0.2
-0.2
-0.4
-0.5
plant
Stem-Upstate
-0.0
+0.0
-1.1
+0.4
-0.5
plant
Stem-Upstate
-0.1
+0.3
-0.9
+0.3
-0.6
carbon source
M9+starch
-0.0
+0.4
-0.2
-0.7
-0.4
plant
Atlantic
+0.0
-0.1
+0.4
-0.5
-0.6
plant
Stem-Atlantic
+0.1
-0.0
-0.8
+0.2
-0.4
carbon source
M9+polygalacturonate
+0.0
+0.1
-0.8
+0.3
-0.4
plant
Upstate
+0.1
-0.1
+0.4
-0.7
-0.5
control
LB
+0.0
+0.2
+0.2
-0.7
-0.4
plant
Stem-Norland
+0.1
+0.0
-0.3
+0.5
-0.6
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