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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS18175 and DZA65_RS18180 are separated by 15 nucleotides
DZA65_RS18180 and DZA65_RS18185 are separated by 20 nucleotides
DZA65_RS18185 and DZA65_RS18190 are separated by 681 nucleotides
DZA65_RS18190 and DZA65_RS18195 are separated by 574 nucleotides
DZA65_RS18175: DZA65_RS18175 - glucarate dehydratase, at 3,916,857 to 3,918,197
_RS18175
DZA65_RS18180: DZA65_RS18180 - glucarate dehydratase, at 3,918,213 to 3,919,574
_RS18180
DZA65_RS18185: DZA65_RS18185 - MFS transporter, at 3,919,595 to 3,920,947
_RS18185
DZA65_RS18190: DZA65_RS18190 - galactarate dehydratase, at 3,921,629 to 3,923,203
_RS18190
DZA65_RS18195: DZA65_RS18195 - PAS domain-containing protein, at 3,923,778 to 3,925,313
_RS18195
Group
Condition
DZA65
_RS18175
DZA65
_RS18180
DZA65
_RS18185
DZA65
_RS18190
DZA65
_RS18195
plant
Stem-Upstate
-0.7
-1.1
+0.0
+0.1
-0.1
plant
Stem-Norland
-0.7
-0.4
-0.2
+0.1
+0.0
carbon source
M9+polygalacturonate
-0.8
-0.3
-0.2
-0.1
+0.1
plant
Stem-Upstate
-0.7
-0.6
-0.1
+0.1
+0.2
carbon source
M9+polygalacturonate
-0.8
-0.3
-0.0
-0.1
+0.1
plant
Stem-Upstate
-0.7
-0.5
-0.1
-0.0
+0.2
plant
Upstate
-0.4
-0.2
-0.2
-0.1
-0.1
plant
Stem-Upstate
-0.6
-0.4
-0.2
+0.3
+0.0
plant
Stem-Norland
-0.3
-0.3
-0.0
-0.2
+0.1
plant
Norland
-0.4
-0.2
-0.2
-0.0
+0.0
plant
Stem-Atlantic
-0.6
-0.3
-0.1
-0.0
+0.1
plant
Stem-Norland
-0.3
-0.3
-0.2
+0.1
-0.1
plant
Stem-Norland
-0.4
-0.2
-0.3
+0.0
+0.1
plant
Stem-Norland
-0.6
-0.1
-0.2
-0.0
+0.2
carbon source
M9+polygalacturonate
-0.7
-0.3
-0.0
+0.0
+0.3
plant
Upstate
-0.4
-0.3
-0.0
+0.0
+0.0
plant
Stem-Norland
-0.7
-0.2
-0.2
+0.1
+0.2
plant
Stem-Norland
-0.6
-0.2
-0.1
+0.1
+0.2
plant
Stem-Upstate
-1.0
-0.2
+0.1
+0.0
+0.4
control
LB
-0.2
-0.1
+0.0
-0.0
-0.3
plant
Stem-Atlantic
-0.1
-0.3
-0.0
-0.2
+0.1
plant
Stem-Atlantic
-0.5
-0.2
-0.1
-0.1
+0.3
plant
Stem-Atlantic
-0.6
-0.0
+0.1
-0.2
+0.1
plant
Stem-Atlantic
-0.8
+0.0
+0.1
+0.0
+0.2
plant
Stem-Upstate
-0.7
+0.0
+0.0
+0.1
+0.1
plant
Atlantic
-0.4
-0.1
+0.1
-0.0
+0.1
plant
Stem-Atlantic
-0.4
-0.1
-0.0
+0.1
+0.3
plant
Norland
-0.1
-0.2
-0.1
+0.3
+0.1
plant
Stem-Upstate
-0.0
-0.2
-0.1
+0.5
-0.1
carbon source
M9+glycerol
-0.0
+0.3
-0.2
+0.2
-0.0
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DZA65_RS18185
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