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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS17445 and DZA65_RS17450 are separated by 46 nucleotides
DZA65_RS17450 and DZA65_RS17455 are separated by 112 nucleotides
DZA65_RS17455 and DZA65_RS17460 are separated by 1880 nucleotides
DZA65_RS17460 and DZA65_RS17465 are separated by 84 nucleotides
DZA65_RS17445: DZA65_RS17445 - recombination regulator RecX, at 3,756,948 to 3,757,436
_RS17445
DZA65_RS17450: DZA65_RS17450 - recombinase RecA, at 3,757,483 to 3,758,559
_RS17450
DZA65_RS17455: DZA65_RS17455 - nicotinamide-nucleotide amidase, at 3,758,672 to 3,759,160
_RS17455
DZA65_RS17460: DZA65_RS17460 - SRPBCC family protein, at 3,761,041 to 3,761,553
_RS17460
DZA65_RS17465: DZA65_RS17465 - cytochrome b561, at 3,761,638 to 3,762,171
_RS17465
Group
Condition
DZA65
_RS17445
DZA65
_RS17450
DZA65
_RS17455
DZA65
_RS17460
DZA65
_RS17465
plant
Stem-Upstate
-0.1
N.D.
-0.7
-0.5
-0.1
plant
Stem-Atlantic
+0.1
N.D.
-0.4
-1.0
+0.1
plant
Stem-Upstate
+0.0
N.D.
-0.9
-0.5
+0.2
plant
Stem-Atlantic
-0.0
N.D.
-0.2
-0.8
+0.0
plant
Upstate
+0.0
N.D.
-0.1
-0.7
-0.1
carbon source
M9+glycerol
-0.1
N.D.
-0.3
-0.5
+0.2
carbon source
M9+glycerol
+0.0
N.D.
-0.6
-0.2
-0.0
plant
Atlantic
+0.0
N.D.
+0.1
-0.6
-0.2
plant
Stem-Atlantic
+0.2
N.D.
-0.2
-0.6
-0.2
plant
Stem-Upstate
+0.1
N.D.
-0.7
-0.0
+0.1
plant
Stem-Atlantic
-0.3
N.D.
-0.5
-0.0
+0.3
plant
Upstate
+0.3
N.D.
-0.2
-0.5
-0.0
plant
Stem-Norland
-0.2
N.D.
+0.2
-0.1
-0.2
plant
Upstate
+0.1
N.D.
-0.0
-0.6
+0.2
plant
Norland
+0.2
N.D.
-0.0
-0.5
+0.0
carbon source
M9+glycerol
+0.0
N.D.
-0.4
-0.1
+0.2
carbon source
M9+sucrose
-0.0
N.D.
-0.5
+0.3
+0.1
plant
Stem-Norland
-0.1
N.D.
-0.4
+0.2
+0.2
plant
Upstate
-0.0
N.D.
+0.1
-0.3
+0.2
carbon source
M9+sucrose
+0.0
N.D.
-0.5
+0.6
-0.2
plant
Stem-Norland
+0.1
N.D.
-0.1
-0.2
+0.2
carbon source
M9+sucrose
+0.1
N.D.
-0.3
+0.2
+0.2
plant
Stem-Norland
-0.2
N.D.
-0.1
+0.3
+0.3
control
LB
-0.2
N.D.
+0.1
+0.4
+0.1
stress
3.75mM_PTB
-0.1
N.D.
+0.2
+0.2
+0.1
stress
3.75mM_PTB
-0.1
N.D.
+0.1
+0.3
+0.3
plant
Norland
+0.3
N.D.
+0.1
+0.1
+0.2
control
LB
+0.1
N.D.
+0.1
+0.4
+0.2
plant
Stem-Norland
+0.2
N.D.
-0.4
+0.9
+0.2
plant
Stem-Upstate
+0.3
N.D.
+0.1
+0.5
+0.1
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