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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS17155 and DZA65_RS17160 are separated by 15 nucleotides
DZA65_RS17160 and DZA65_RS17165 are separated by 25 nucleotides
DZA65_RS17165 and DZA65_RS17170 are separated by 68 nucleotides
DZA65_RS17170 and DZA65_RS17175 overlap by 4 nucleotides
DZA65_RS17155: DZA65_RS17155 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 3,705,447 to 3,706,241
_RS17155
DZA65_RS17160: DZA65_RS17160 - pantoate--beta-alanine ligase, at 3,706,257 to 3,707,111
_RS17160
DZA65_RS17165: DZA65_RS17165 - aspartate 1-decarboxylase, at 3,707,137 to 3,707,517
_RS17165
DZA65_RS17170: DZA65_RS17170 - ABC transporter permease, at 3,707,586 to 3,708,356
_RS17170
DZA65_RS17175: DZA65_RS17175 - ABC transporter ATP-binding protein, at 3,708,353 to 3,709,276
_RS17175
Group
Condition
DZA65
_RS17155
DZA65
_RS17160
DZA65
_RS17165
DZA65
_RS17170
DZA65
_RS17175
carbon source
M9+polygalacturonate
-3.3
-2.8
-3.3
+0.0
-0.4
carbon source
M9+polygalacturonate
-3.3
-2.8
-3.0
-0.2
-0.2
carbon source
M9+polygalacturonate
-3.3
-3.0
-3.1
-0.1
-0.0
carbon source
M9+starch
-2.6
-2.8
-2.7
-0.2
-0.2
carbon source
M9+starch
-2.6
-2.2
-2.6
-0.0
+0.0
carbon source
M9+sucrose
-2.6
-2.4
-2.5
+0.1
+0.3
carbon source
M9+starch
-2.1
-2.2
-2.7
-0.1
+0.0
carbon source
M9+glycerol
-1.9
-2.8
-2.4
-0.0
+0.1
carbon source
M9+sucrose
-2.3
-2.1
-2.1
-0.1
-0.3
carbon source
M9+glycerol
-2.2
-2.3
-2.4
+0.1
+0.1
carbon source
M9+glycerol
-2.2
-2.1
-2.1
-0.1
+0.2
carbon source
M9+sucrose
-2.3
-1.9
-2.2
+0.0
+0.1
carbon source
M9+glycerol
-2.2
-2.3
-1.8
+0.0
-0.0
carbon source
M9+glycerol
-2.2
-1.8
-1.8
-0.1
+0.0
carbon source
M9+glycerol
-1.8
-1.9
-1.6
+0.1
+0.1
plant
Stem-Norland
-0.1
-0.2
-0.1
-0.3
-0.7
plant
Stem-Atlantic
-0.2
-0.2
-0.2
-0.2
-0.3
plant
Stem-Upstate
-0.3
-0.5
+0.3
-0.1
-0.6
plant
Stem-Upstate
-1.0
-0.1
+0.2
-0.2
+0.1
plant
Stem-Norland
-0.2
-0.6
+0.2
-0.1
-0.0
plant
Atlantic
-0.2
-0.1
-0.4
+0.0
+0.1
plant
Stem-Norland
-0.3
+0.2
-0.1
-0.1
-0.3
plant
Stem-Norland
+0.2
-0.3
-0.2
-0.1
-0.2
plant
Stem-Norland
-0.3
-0.2
-0.2
-0.1
+0.2
plant
Stem-Atlantic
-0.4
+0.2
+0.0
-0.1
-0.3
plant
Stem-Upstate
+0.3
-0.1
+0.1
-0.1
-0.4
plant
Atlantic
-0.2
+0.2
-0.1
-0.1
+0.3
plant
Stem-Upstate
-0.5
+0.0
-0.1
+0.3
+0.5
plant
Norland
+0.1
+0.6
-0.1
+0.0
-0.1
plant
Stem-Upstate
+0.2
-0.0
-0.2
+0.4
+0.3
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