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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS16855 and DZA65_RS16860 overlap by 14 nucleotides
DZA65_RS16860 and DZA65_RS16865 are separated by 13 nucleotides
DZA65_RS16865 and DZA65_RS16870 are separated by 777 nucleotides
DZA65_RS16870 and DZA65_RS16875 are separated by 348 nucleotides
DZA65_RS16855: DZA65_RS16855 - type I secretion system permease/ATPase, at 3,641,495 to 3,643,681
_RS16855
DZA65_RS16860: DZA65_RS16860 - HlyD family efflux transporter periplasmic adaptor subunit, at 3,643,668 to 3,644,516
_RS16860
DZA65_RS16865: DZA65_RS16865 - sensor domain-containing diguanylate cyclase, at 3,644,530 to 3,646,047
_RS16865
DZA65_RS16870: DZA65_RS16870 - cyclic-guanylate-specific phosphodiesterase, at 3,646,825 to 3,647,616
_RS16870
DZA65_RS16875: DZA65_RS16875 - YfhL family 4Fe-4S dicluster ferredoxin, at 3,647,965 to 3,648,225
_RS16875
Group
Condition
DZA65
_RS16855
DZA65
_RS16860
DZA65
_RS16865
DZA65
_RS16870
DZA65
_RS16875
plant
Stem-Upstate
-0.2
+0.1
+0.4
-2.4
-0.2
plant
Stem-Upstate
-0.2
-0.1
+0.1
-1.4
-0.6
plant
Stem-Norland
-0.2
-0.0
+0.1
-1.6
-0.4
plant
Stem-Norland
-0.3
-0.3
+0.4
-2.1
+0.2
plant
Stem-Norland
-0.1
-0.4
-0.3
-1.0
-0.1
plant
Stem-Atlantic
-0.2
-0.2
-0.2
-1.2
+0.1
plant
Stem-Upstate
-0.1
-0.0
+0.2
-1.7
+0.1
plant
Stem-Atlantic
-0.5
-0.1
-0.1
-1.0
+0.2
plant
Stem-Upstate
-0.4
-0.1
+0.1
-0.8
-0.1
plant
Stem-Atlantic
+0.0
-0.0
+0.2
-1.4
-0.2
plant
Stem-Norland
-0.4
-0.2
-0.0
-1.0
+0.3
plant
Stem-Norland
-0.3
-0.1
+0.6
-1.4
-0.0
plant
Stem-Norland
-0.4
+0.0
-0.1
-0.8
+0.0
plant
Stem-Upstate
-0.2
-0.0
-0.2
-0.4
-0.3
plant
Stem-Atlantic
+0.1
+0.1
+0.4
-1.4
-0.1
plant
Stem-Atlantic
+0.1
+0.0
+0.3
-1.2
+0.0
plant
Stem-Norland
+0.1
+0.2
+0.3
-1.1
-0.1
plant
Stem-Atlantic
+0.1
+0.2
+0.5
-1.1
-0.2
plant
Stem-Norland
+0.2
+0.2
+0.6
-1.4
-0.1
control
PDB
+0.2
+0.0
+0.3
-0.3
-0.2
carbon source
M9+glycerol
-0.1
-0.0
-0.3
+0.9
-0.4
control
PDB
+0.3
+0.0
+0.4
-0.4
-0.2
control
PDB
+0.3
+0.1
+0.4
-0.3
-0.2
carbon source
M9+polygalacturonate
-0.0
-0.2
-0.1
+0.6
+0.1
carbon source
M9+glycerol
+0.0
+0.1
-0.1
+0.8
-0.3
plant
Norland
+0.1
-0.2
+0.0
+0.5
+0.3
carbon source
M9+polygalacturonate
-0.0
+0.0
-0.1
+0.9
-0.0
carbon source
M9+glycerol
+0.1
-0.1
-0.2
+0.8
+0.2
carbon source
M9+glycerol
+0.2
-0.1
-0.1
+0.9
-0.1
carbon source
M9+glycerol
+0.0
+0.1
-0.2
+0.9
+0.1
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DZA65_RS16865
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