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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS16840 and DZA65_RS16845 are separated by 24 nucleotides
DZA65_RS16845 and DZA65_RS16850 are separated by 151 nucleotides
DZA65_RS16850 and DZA65_RS16855 are separated by 721 nucleotides
DZA65_RS16855 and DZA65_RS16860 overlap by 14 nucleotides
DZA65_RS16840: DZA65_RS16840 - tRNA adenosine(34) deaminase TadA, at 3,638,829 to 3,639,332
_RS16840
DZA65_RS16845: DZA65_RS16845 - N-acetylmuramic acid 6-phosphate etherase, at 3,639,357 to 3,640,280
_RS16845
DZA65_RS16850: DZA65_RS16850 - hypothetical protein, at 3,640,432 to 3,640,773
_RS16850
DZA65_RS16855: DZA65_RS16855 - type I secretion system permease/ATPase, at 3,641,495 to 3,643,681
_RS16855
DZA65_RS16860: DZA65_RS16860 - HlyD family efflux transporter periplasmic adaptor subunit, at 3,643,668 to 3,644,516
_RS16860
Group
Condition
DZA65
_RS16840
DZA65
_RS16845
DZA65
_RS16850
DZA65
_RS16855
DZA65
_RS16860
carbon source
M9+starch
N.D.
+0.0
-0.9
-0.0
-0.0
plant
Stem-Upstate
N.D.
-0.1
-0.5
-0.1
-0.0
plant
Stem-Norland
N.D.
-0.4
+0.2
-0.1
-0.4
plant
Stem-Norland
N.D.
+0.5
-0.8
-0.2
-0.0
plant
Atlantic
N.D.
+0.0
-0.6
+0.1
+0.0
control
PDB
N.D.
-0.0
-0.6
+0.3
+0.0
carbon source
M9+sucrose
N.D.
-0.3
+0.2
-0.1
-0.1
plant
Stem-Atlantic
N.D.
+0.2
-0.4
+0.1
+0.0
control
PDB
N.D.
-0.3
+0.3
-0.1
-0.1
plant
Stem-Atlantic
N.D.
-0.2
-0.2
+0.1
+0.2
plant
Stem-Norland
N.D.
-0.1
+0.6
-0.3
-0.3
plant
Stem-Atlantic
N.D.
-0.1
+0.5
-0.2
-0.2
control
LB
N.D.
-0.3
+0.5
-0.1
-0.1
control
PDB
N.D.
-0.1
+0.4
-0.1
-0.1
plant
Stem-Norland
N.D.
-0.4
+0.9
-0.4
+0.0
plant
Stem-Norland
N.D.
-0.0
-0.2
+0.2
+0.2
control
PDB
N.D.
-0.2
+0.5
+0.0
-0.1
plant
Stem-Atlantic
N.D.
+0.3
-0.3
+0.1
+0.1
plant
Stem-Atlantic
N.D.
+0.1
+0.7
-0.5
-0.1
plant
Atlantic
N.D.
-0.2
+0.4
+0.2
-0.0
plant
Stem-Norland
N.D.
+0.2
+0.8
-0.4
-0.2
plant
Upstate
N.D.
-0.1
+0.4
+0.1
+0.1
plant
Norland
N.D.
+0.0
+0.5
+0.2
-0.1
plant
Stem-Upstate
N.D.
+0.8
-0.2
+0.2
-0.1
plant
Stem-Upstate
N.D.
+0.5
+0.4
-0.2
-0.0
control
PDB
N.D.
+0.0
+0.3
+0.3
+0.1
plant
Upstate
N.D.
+0.1
+0.4
+0.2
+0.1
plant
Stem-Upstate
N.D.
+0.3
+0.8
-0.3
+0.0
plant
Stem-Upstate
N.D.
+0.4
+1.0
-0.4
-0.1
carbon source
M9+glycerol
N.D.
+0.5
+0.3
+0.0
+0.1
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DZA65_RS16850
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