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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS16785 and DZA65_RS16790 are separated by 352 nucleotides
DZA65_RS16790 and DZA65_RS16795 are separated by 527 nucleotides
DZA65_RS16795 and DZA65_RS16800 are separated by 77 nucleotides
DZA65_RS16800 and DZA65_RS16805 are separated by 82 nucleotides
DZA65_RS16785: DZA65_RS16785 - pectate lyase, at 3,621,836 to 3,622,228
_RS16785
DZA65_RS16790: DZA65_RS16790 - polysaccharide lyase, at 3,622,581 to 3,623,795
_RS16790
DZA65_RS16795: DZA65_RS16795 - polysaccharide lyase, at 3,624,323 to 3,625,501
_RS16795
DZA65_RS16800: DZA65_RS16800 - pectin acetylesterase, at 3,625,579 to 3,627,234
_RS16800
DZA65_RS16805: DZA65_RS16805 - pectinesterase, at 3,627,317 to 3,628,414
_RS16805
Group
Condition
DZA65
_RS16785
DZA65
_RS16790
DZA65
_RS16795
DZA65
_RS16800
DZA65
_RS16805
plant
Stem-Atlantic
-0.6
-0.1
+0.0
-0.1
+0.0
plant
Atlantic
-0.7
-0.1
+0.2
+0.1
+0.1
plant
Stem-Norland
-0.7
+0.2
+0.1
+0.1
+0.0
control
LB
+0.3
-0.1
-0.0
-0.3
-0.0
carbon source
M9+sucrose
-0.5
+0.4
-0.2
+0.1
+0.2
carbon source
M9+starch
-0.1
+0.3
-0.3
-0.1
+0.1
control
PDB
+0.2
-0.3
+0.1
-0.1
+0.1
plant
Upstate
+0.3
-0.4
+0.1
+0.0
-0.0
plant
Stem-Norland
-0.5
-0.0
+0.2
+0.1
+0.2
plant
Stem-Upstate
+0.0
+0.0
+0.4
-0.3
-0.1
carbon source
M9+starch
-0.3
+0.3
-0.1
+0.0
+0.1
plant
Stem-Norland
-0.2
+0.2
+0.4
-0.2
-0.1
plant
Stem-Atlantic
-0.2
-0.1
+0.3
+0.1
+0.1
plant
Stem-Upstate
-0.2
+0.2
+0.1
+0.1
+0.1
plant
Stem-Upstate
+0.4
-0.1
+0.3
-0.2
-0.2
plant
Atlantic
+0.3
-0.1
+0.1
+0.1
-0.0
carbon source
M9+polygalacturonate
+0.2
+0.3
-0.3
-0.0
+0.2
carbon source
M9+polygalacturonate
+0.2
+0.3
-0.3
-0.1
+0.2
plant
Stem-Atlantic
-0.1
-0.0
+0.4
-0.0
+0.2
plant
Atlantic
+0.6
-0.2
+0.2
-0.1
-0.0
plant
Stem-Norland
+0.1
+0.2
+0.1
+0.3
-0.2
carbon source
M9+starch
+0.1
+0.3
+0.1
-0.1
+0.1
carbon source
M9+sucrose
+0.0
+0.4
-0.1
+0.2
+0.1
plant
Upstate
+0.7
+0.0
+0.1
-0.2
-0.0
control
LB
+0.6
-0.1
-0.0
+0.0
+0.1
plant
Stem-Atlantic
+0.3
+0.1
+0.2
+0.1
+0.0
control
PDB
+0.4
+0.3
-0.0
+0.0
+0.1
plant
Stem-Upstate
+0.7
+0.1
+0.3
-0.3
-0.0
plant
Stem-Upstate
+0.4
-0.0
+0.4
-0.2
+0.3
plant
Stem-Upstate
+1.0
-0.1
+0.3
-0.5
+0.3
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DZA65_RS16795
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