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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS16175 and DZA65_RS16180 are separated by 8 nucleotides
DZA65_RS16180 and DZA65_RS16185 are separated by 13 nucleotides
DZA65_RS16185 and DZA65_RS16190 are separated by 128 nucleotides
DZA65_RS16190 and DZA65_RS16195 are separated by 181 nucleotides
DZA65_RS16175: DZA65_RS16175 - MFS transporter, at 3,508,617 to 3,510,020
_RS16175
DZA65_RS16180: DZA65_RS16180 - two-component system sensor histidine kinase BaeS, at 3,510,029 to 3,511,387
_RS16180
DZA65_RS16185: DZA65_RS16185 - two-component system response regulator BaeR, at 3,511,401 to 3,512,132
_RS16185
DZA65_RS16190: DZA65_RS16190 - glutathione S-transferase family protein, at 3,512,261 to 3,513,223
_RS16190
DZA65_RS16195: DZA65_RS16195 - tRNA 5-hydroxyuridine modification protein YegQ, at 3,513,405 to 3,514,781
_RS16195
Group
Condition
DZA65
_RS16175
DZA65
_RS16180
DZA65
_RS16185
DZA65
_RS16190
DZA65
_RS16195
plant
Stem-Atlantic
-0.2
-0.5
-0.1
-0.2
-0.3
plant
Stem-Atlantic
-0.0
-0.1
-0.6
-0.2
+0.1
plant
Stem-Upstate
+0.1
+0.2
-1.0
-0.1
+0.3
plant
Stem-Upstate
+0.2
-0.3
-0.7
+0.0
+0.2
plant
Stem-Norland
+0.4
-0.0
+0.1
-0.5
-0.3
plant
Stem-Upstate
-0.1
-0.4
+0.1
+0.1
+0.1
plant
Stem-Norland
+0.2
-0.3
+0.2
-0.1
-0.1
plant
Stem-Atlantic
-0.1
-0.1
+0.4
-0.3
+0.1
plant
Upstate
-0.2
+0.1
+0.3
-0.2
+0.0
plant
Upstate
-0.2
+0.1
+0.3
-0.2
+0.1
carbon source
M9+glycerol
+0.1
-0.2
+0.4
-0.2
+0.0
carbon source
M9+polygalacturonate
-0.1
-0.2
+0.3
-0.1
+0.2
carbon source
M9+sucrose
-0.0
+0.1
+0.3
-0.3
+0.1
plant
Atlantic
+0.3
+0.2
-0.3
+0.0
-0.1
plant
Stem-Upstate
+0.4
-0.3
-0.2
+0.0
+0.3
carbon source
M9+glycerol
-0.2
+0.0
+0.5
-0.0
-0.1
control
LB
+0.1
-0.1
-0.2
+0.3
+0.1
carbon source
M9+starch
-0.2
+0.2
+0.1
+0.1
+0.0
control
LB
-0.2
+0.3
+0.2
+0.1
-0.1
plant
Norland
-0.2
+0.3
+0.1
+0.1
+0.1
plant
Stem-Norland
+0.3
+0.6
-0.1
-0.3
-0.0
plant
Stem-Norland
-0.2
+0.4
+0.2
-0.1
+0.2
stress
1.88mM_PTB
-0.1
+0.5
+0.1
+0.1
-0.1
carbon source
M9+starch
+0.0
+0.2
+0.3
-0.1
+0.1
plant
Stem-Atlantic
+0.1
+0.4
+0.1
-0.1
+0.1
carbon source
M9+sucrose
-0.1
+0.1
+0.4
+0.1
+0.1
plant
Atlantic
-0.1
+0.1
+0.2
+0.2
+0.2
plant
Stem-Upstate
-0.2
-0.2
+0.7
+0.3
+0.0
plant
Stem-Upstate
+0.1
+0.6
+0.1
+0.3
-0.2
plant
Stem-Upstate
-0.0
+0.9
-0.3
+0.1
+0.4
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