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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS16120 and DZA65_RS16125 are separated by 153 nucleotides
DZA65_RS16125 and DZA65_RS16130 are separated by 18 nucleotides
DZA65_RS16130 and DZA65_RS16135 overlap by 4 nucleotides
DZA65_RS16135 and DZA65_RS16140 are separated by 219 nucleotides
DZA65_RS16120: DZA65_RS16120 - DNA helicase IV, at 3,489,834 to 3,491,891
_RS16120
DZA65_RS16125: DZA65_RS16125 - YccF domain-containing protein, at 3,492,045 to 3,492,491
_RS16125
DZA65_RS16130: DZA65_RS16130 - TIGR01666 family membrane protein, at 3,492,510 to 3,494,705
_RS16130
DZA65_RS16135: DZA65_RS16135 - TfoX/Sxy family DNA transformation protein, at 3,494,702 to 3,495,331
_RS16135
DZA65_RS16140: DZA65_RS16140 - cell division inhibitor SulA, at 3,495,551 to 3,496,045
_RS16140
Group
Condition
DZA65
_RS16120
DZA65
_RS16125
DZA65
_RS16130
DZA65
_RS16135
DZA65
_RS16140
plant
Stem-Upstate
-0.5
-0.5
+0.0
-0.0
-0.7
plant
Stem-Upstate
-0.5
+0.5
-0.0
-0.9
-0.5
plant
Stem-Norland
-0.9
-0.1
+0.0
+0.0
-0.4
plant
Stem-Norland
-0.4
-0.1
-0.0
+0.0
-0.8
control
LB
-0.7
+0.3
+0.0
+0.1
-0.7
plant
Stem-Upstate
-0.8
+0.2
+0.1
-0.0
-0.4
plant
Stem-Atlantic
-0.2
-0.2
+0.1
-0.3
-0.2
plant
Stem-Atlantic
-0.3
-0.0
+0.1
-0.2
-0.2
plant
Stem-Upstate
-1.0
+0.1
-0.0
+0.2
-0.0
plant
Stem-Norland
-0.5
+0.2
+0.0
-0.3
-0.2
plant
Stem-Upstate
-0.6
+0.2
+0.1
-0.2
-0.1
plant
Atlantic
-0.6
-0.1
+0.0
+0.1
-0.1
plant
Stem-Upstate
-0.7
+0.3
+0.2
-0.2
-0.2
plant
Stem-Upstate
-0.5
-0.4
+0.2
+0.1
+0.1
plant
Stem-Norland
-0.7
+0.1
+0.2
-0.0
-0.0
plant
Upstate
-0.7
-0.0
+0.0
+0.0
+0.3
plant
Stem-Atlantic
-0.1
+0.3
+0.0
-0.2
-0.4
plant
Upstate
-0.6
+0.2
+0.0
-0.1
+0.1
plant
Stem-Norland
-0.0
+0.3
-0.2
+0.1
-0.3
control
LB
-0.4
+0.3
+0.1
-0.1
-0.1
plant
Upstate
-0.5
+0.2
+0.0
-0.0
+0.2
plant
Stem-Norland
-0.6
+0.1
+0.3
+0.2
-0.1
plant
Upstate
-0.5
+0.3
-0.1
+0.1
+0.1
plant
Norland
-0.3
+0.4
+0.0
-0.1
+0.1
plant
Atlantic
-0.2
+0.5
+0.0
+0.2
+0.2
carbon source
M9+sucrose
-0.2
+0.4
+0.1
+0.1
+0.2
carbon source
M9+polygalacturonate
-0.4
+0.5
-0.0
+0.3
+0.3
carbon source
M9+sucrose
-0.2
+0.5
-0.1
+0.2
+0.3
carbon source
M9+starch
+0.2
+0.4
-0.0
+0.3
+0.1
carbon source
M9+glycerol
+0.2
+0.5
+0.0
+0.1
+0.2
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