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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS16035 and DZA65_RS16040 overlap by 4 nucleotides
DZA65_RS16040 and DZA65_RS16045 are separated by 222 nucleotides
DZA65_RS16045 and DZA65_RS16050 are separated by 4 nucleotides
DZA65_RS16050 and DZA65_RS16055 are separated by 215 nucleotides
DZA65_RS16035: DZA65_RS16035 - phosphate ABC transporter permease PstA, at 3,475,173 to 3,476,819
_RS16035
DZA65_RS16040: DZA65_RS16040 - ABC transporter permease subunit, at 3,476,816 to 3,478,972
_RS16040
DZA65_RS16045: DZA65_RS16045 - polyphosphate kinase 1, at 3,479,195 to 3,481,264
_RS16045
DZA65_RS16050: DZA65_RS16050 - exopolyphosphatase, at 3,481,269 to 3,482,798
_RS16050
DZA65_RS16055: DZA65_RS16055 - DUF2633 family protein, at 3,483,014 to 3,483,241
_RS16055
Group
Condition
DZA65
_RS16035
DZA65
_RS16040
DZA65
_RS16045
DZA65
_RS16050
DZA65
_RS16055
plant
Stem-Upstate
+0.2
-0.1
-1.6
-0.9
-0.5
plant
Stem-Upstate
-0.1
-0.4
-0.4
-1.6
-0.2
plant
Stem-Upstate
-0.0
-0.3
-0.9
-1.0
-0.4
plant
Stem-Norland
+0.2
-0.2
-0.5
-1.1
-1.1
plant
Stem-Norland
-0.1
-0.2
-1.5
-0.8
-0.1
plant
Stem-Norland
-0.3
-0.1
-0.7
-0.8
-0.6
plant
Stem-Upstate
-0.3
-0.3
-1.4
-0.8
+0.3
plant
Stem-Atlantic
-0.3
-0.1
-1.2
-1.2
+0.3
plant
Stem-Atlantic
+0.1
-0.3
-0.9
-1.1
-0.3
plant
Stem-Norland
-0.3
+0.0
-1.3
-0.3
-0.5
plant
Stem-Atlantic
-0.1
-0.1
-0.6
-0.8
-0.6
stress
1.88mM_PTB
-0.4
-0.1
-1.1
-0.3
-0.1
plant
Stem-Norland
+0.2
-0.3
-0.4
-0.7
-0.7
control
LB
-0.3
-0.0
-1.2
-0.3
-0.0
carbon source
M9+polygalacturonate
-0.1
+0.1
-1.5
-0.2
-0.0
plant
Stem-Norland
-0.1
-0.3
-1.0
-0.5
+0.1
plant
Upstate
-0.5
-0.1
-1.1
-0.4
+0.5
plant
Stem-Atlantic
-0.3
+0.1
-0.5
-0.9
+0.0
control
PDB
+0.3
+0.4
-1.5
-0.5
-0.3
plant
Stem-Atlantic
-0.0
-0.2
-0.6
-1.0
+0.3
plant
Stem-Upstate
+0.1
+0.1
-1.3
-1.1
+0.8
carbon source
M9+polygalacturonate
+0.2
-0.1
-1.4
-0.3
+0.4
control
PDB
+0.0
+0.2
-1.4
+0.3
-0.3
control
PDB
+0.0
+0.2
-1.2
+0.2
-0.4
control
PDB
+0.3
+0.5
-1.3
-0.4
-0.3
plant
Atlantic
-0.2
-0.1
-0.6
-0.6
+0.5
carbon source
M9+starch
-0.3
-0.2
-1.1
+0.2
+0.3
plant
Stem-Upstate
-0.1
+0.1
-0.9
-0.6
+0.5
control
PDB
+0.4
+0.4
-1.2
-0.4
+0.0
carbon source
M9+polygalacturonate
-0.0
+0.2
-1.3
-0.1
+0.6
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