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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS15995 and DZA65_RS16000 are separated by 594 nucleotides
DZA65_RS16000 and DZA65_RS16005 are separated by 62 nucleotides
DZA65_RS16005 and DZA65_RS16015 are separated by 202 nucleotides
DZA65_RS16015 and DZA65_RS16025 are separated by 110 nucleotides
DZA65_RS15995: DZA65_RS15995 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 3,468,564 to 3,469,634
_RS15995
DZA65_RS16000: DZA65_RS16000 - HAAAP family serine/threonine permease, at 3,470,229 to 3,471,512
_RS16000
DZA65_RS16005: DZA65_RS16005 - L-serine ammonia-lyase, at 3,471,575 to 3,472,945
_RS16005
DZA65_RS16015: DZA65_RS16015 - IS200/IS605 family transposase, at 3,473,148 to 3,473,606
_RS16015
DZA65_RS16025: DZA65_RS16025 - helix-turn-helix transcriptional regulator, at 3,473,717 to 3,474,157
_RS16025
Group
Condition
DZA65
_RS15995
DZA65
_RS16000
DZA65
_RS16005
DZA65
_RS16015
DZA65
_RS16025
plant
Stem-Norland
-2.3
+0.1
+0.1
-2.3
+0.0
plant
Stem-Upstate
-2.8
-0.5
+0.1
-1.1
-0.0
plant
Stem-Norland
-2.5
-0.4
+0.2
-0.7
-0.6
carbon source
M9+polygalacturonate
-3.3
+0.1
+0.1
-0.2
-0.3
plant
Stem-Atlantic
-2.7
-0.1
+0.3
-0.9
+0.1
carbon source
M9+glycerol
-3.0
+0.2
-0.0
-0.5
+0.0
carbon source
M9+polygalacturonate
-3.4
+0.1
+0.1
+0.4
-0.3
plant
Stem-Norland
-2.7
-0.4
+0.1
+0.0
-0.1
plant
Stem-Upstate
-1.9
-0.4
+0.3
-1.0
+0.0
carbon source
M9+sucrose
-2.6
-0.1
+0.1
-0.2
-0.2
plant
Stem-Atlantic
-2.3
-0.2
+0.1
-0.6
+0.1
plant
Norland
-2.1
-0.4
-0.0
+0.2
-0.3
carbon source
M9+glycerol
-2.7
+0.2
+0.1
-0.2
+0.1
plant
Stem-Atlantic
-1.6
-0.1
+0.1
-0.8
-0.1
carbon source
M9+glycerol
-2.6
+0.0
-0.1
+0.3
-0.1
carbon source
M9+sucrose
-3.2
+0.2
+0.1
+0.4
+0.1
plant
Stem-Upstate
-2.7
-0.2
+0.0
-0.2
+0.8
plant
Stem-Norland
-1.5
-0.2
+0.3
-1.1
+0.2
plant
Stem-Atlantic
-2.1
+0.2
+0.3
-1.2
+0.6
plant
Stem-Norland
-3.0
-0.3
+0.1
+0.7
+0.2
carbon source
M9+glycerol
-3.1
+0.3
+0.1
+0.2
+0.2
plant
Stem-Atlantic
-1.7
-0.5
+0.1
+0.2
-0.2
plant
Stem-Atlantic
-2.2
+0.1
+0.2
-0.1
-0.1
carbon source
M9+polygalacturonate
-3.2
+0.1
+0.1
+0.7
+0.1
plant
Stem-Upstate
-2.0
+0.3
+0.0
-0.6
+0.1
plant
Norland
-1.9
-0.3
+0.1
+0.2
-0.1
plant
Stem-Upstate
-2.5
+0.6
+0.4
-0.4
+0.0
carbon source
M9+glycerol
-2.3
-0.2
+0.2
+0.7
+0.2
carbon source
M9+starch
-1.5
+0.0
+0.1
+0.8
-0.3
plant
Stem-Upstate
-1.2
+0.2
+0.4
-0.9
+0.7
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