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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS15930 and DZA65_RS15935 overlap by 50 nucleotides
DZA65_RS15935 and DZA65_RS15940 are separated by 296 nucleotides
DZA65_RS15940 and DZA65_RS15945 overlap by 4 nucleotides
DZA65_RS15945 and DZA65_RS15950 are separated by 11 nucleotides
DZA65_RS15930: DZA65_RS15930 - amidase, at 3,457,226 to 3,457,684
_RS15930
DZA65_RS15935: DZA65_RS15935 - IS110 family transposase, at 3,457,635 to 3,458,512
_RS15935
DZA65_RS15940: DZA65_RS15940 - imidazolonepropionase, at 3,458,809 to 3,460,023
_RS15940
DZA65_RS15945: DZA65_RS15945 - N-formylglutamate deformylase, at 3,460,020 to 3,460,820
_RS15945
DZA65_RS15950: DZA65_RS15950 - HAMP domain-containing protein, at 3,460,832 to 3,462,502
_RS15950
Group
Condition
DZA65
_RS15930
DZA65
_RS15935
DZA65
_RS15940
DZA65
_RS15945
DZA65
_RS15950
plant
Stem-Norland
-0.0
+0.0
-0.5
+0.1
-0.1
plant
Stem-Upstate
-0.1
-0.1
-0.1
-0.4
+0.2
carbon source
M9+sucrose
+0.2
-0.1
+0.0
-0.3
-0.2
plant
Atlantic
+0.1
+0.1
-0.2
+0.0
-0.2
plant
Stem-Norland
-0.2
+0.2
+0.0
+0.0
-0.3
plant
Norland
+0.2
+0.2
-0.2
-0.0
-0.2
plant
Stem-Upstate
-0.0
-0.1
+0.2
+0.2
-0.3
stress
3.75mM_PTB
+0.0
-0.2
+0.0
+0.2
-0.0
control
PDB
-0.1
-0.1
+0.0
+0.3
-0.1
carbon source
M9+sucrose
+0.2
-0.1
+0.2
-0.0
-0.1
control
LB
-0.1
+0.1
+0.2
+0.1
-0.2
plant
Stem-Atlantic
+0.3
+0.1
-0.1
-0.2
+0.0
plant
Stem-Atlantic
+0.0
+0.1
+0.3
-0.2
-0.0
plant
Upstate
-0.2
+0.2
+0.1
-0.0
+0.1
carbon source
M9+sucrose
+0.3
-0.1
+0.0
-0.0
+0.1
plant
Atlantic
+0.3
+0.0
+0.1
-0.2
+0.1
plant
Stem-Norland
-0.1
+0.2
-0.0
+0.0
+0.3
plant
Stem-Upstate
+0.1
+0.5
+0.2
-0.5
-0.0
plant
Stem-Upstate
+0.1
+0.4
+0.1
-0.1
+0.0
plant
Norland
+0.2
+0.0
-0.1
+0.3
+0.1
plant
Norland
+0.2
+0.1
+0.1
+0.2
-0.1
plant
Stem-Norland
+0.2
-0.0
+0.5
-0.0
-0.1
plant
Norland
+0.1
+0.0
+0.2
+0.1
+0.0
stress
1.88mM_PTB
+0.1
+0.0
+0.1
+0.1
+0.1
plant
Upstate
+0.1
+0.2
+0.2
+0.1
+0.0
plant
Stem-Upstate
-0.1
+0.2
+0.1
+0.4
-0.1
plant
Stem-Norland
+0.3
-0.0
+0.0
+0.1
+0.2
plant
Stem-Upstate
+0.3
+0.4
-0.0
-0.1
+0.1
plant
Stem-Norland
+0.2
+0.1
+0.1
+0.1
+0.1
carbon source
M9+polygalacturonate
+0.2
+0.1
+0.2
+0.1
+0.1
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DZA65_RS15940
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