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Gene
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Cofit
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS15905 and DZA65_RS15910 are separated by 182 nucleotides
DZA65_RS15910 and DZA65_RS15915 are separated by 0 nucleotides
DZA65_RS15915 and DZA65_RS15920 are separated by 252 nucleotides
DZA65_RS15920 and DZA65_RS15925 are separated by 115 nucleotides
DZA65_RS15905: DZA65_RS15905 - LysR family transcriptional regulator, at 3,452,744 to 3,453,670
_RS15905
DZA65_RS15910: DZA65_RS15910 - mandelate racemase/muconate lactonizing enzyme family protein, at 3,453,853 to 3,455,016
_RS15910
DZA65_RS15915: DZA65_RS15915 - hypothetical protein, at 3,455,017 to 3,455,320
_RS15915
DZA65_RS15920: DZA65_RS15920 - SDR family NAD(P)-dependent oxidoreductase, at 3,455,573 to 3,456,328
_RS15920
DZA65_RS15925: DZA65_RS15925 - TetR/AcrR family transcriptional regulator, at 3,456,444 to 3,457,070
_RS15925
Group
Condition
DZA65
_RS15905
DZA65
_RS15910
DZA65
_RS15915
DZA65
_RS15920
DZA65
_RS15925
plant
Stem-Atlantic
+0.0
+0.0
-0.3
-0.2
-0.3
plant
Stem-Norland
-0.1
-0.0
-0.2
+0.1
-0.2
plant
Stem-Norland
-0.2
-0.0
+0.1
+0.1
-0.5
plant
Upstate
-0.1
-0.1
-0.2
+0.1
-0.2
plant
Stem-Norland
+0.1
-0.3
-0.0
+0.0
-0.3
carbon source
M9+sucrose
+0.1
-0.0
-0.0
+0.1
-0.5
plant
Stem-Atlantic
-0.1
-0.0
-0.2
+0.1
-0.2
plant
Atlantic
-0.0
-0.2
+0.2
+0.0
-0.3
plant
Stem-Upstate
-0.0
+0.1
+0.0
-0.2
-0.2
carbon source
M9+sucrose
-0.0
+0.1
+0.1
+0.1
-0.6
carbon source
M9+sucrose
+0.1
+0.1
+0.1
+0.1
-0.6
plant
Stem-Atlantic
-0.1
-0.2
-0.1
+0.2
+0.0
plant
Stem-Upstate
-0.0
-0.1
+0.2
-0.1
-0.2
plant
Stem-Norland
-0.2
+0.1
+0.3
-0.1
-0.2
carbon source
M9+polygalacturonate
+0.2
+0.0
-0.1
+0.1
-0.4
plant
Stem-Upstate
-0.3
+0.4
+0.3
-0.3
-0.3
plant
Stem-Upstate
-0.2
+0.2
-0.1
+0.1
-0.1
plant
Stem-Upstate
-0.1
-0.0
+0.1
+0.2
-0.2
carbon source
M9+polygalacturonate
+0.1
+0.1
-0.2
+0.1
-0.3
stress
1.88mM_PTB
+0.1
+0.1
+0.1
-0.1
-0.2
plant
Stem-Upstate
+0.0
-0.0
+0.2
-0.1
-0.1
plant
Stem-Norland
+0.3
+0.2
-0.2
-0.1
-0.2
carbon source
M9+polygalacturonate
+0.2
+0.1
+0.1
+0.0
-0.3
plant
Stem-Norland
-0.2
+0.2
+0.2
+0.1
-0.1
plant
Upstate
+0.0
+0.0
+0.3
+0.1
-0.2
plant
Stem-Upstate
+0.1
+0.3
+0.5
-0.5
-0.2
plant
Norland
+0.1
+0.0
+0.1
+0.2
-0.1
plant
Upstate
-0.0
+0.0
+0.2
+0.2
-0.2
control
LB
+0.1
+0.1
+0.2
+0.1
-0.1
plant
Stem-Norland
-0.1
+0.2
+0.3
+0.2
-0.1
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