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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS15840 and DZA65_RS15845 are separated by 213 nucleotides
DZA65_RS15845 and DZA65_RS15850 are separated by 295 nucleotides
DZA65_RS15850 and DZA65_RS15855 overlap by 22 nucleotides
DZA65_RS15855 and DZA65_RS15860 are separated by 9 nucleotides
DZA65_RS15840: DZA65_RS15840 - ABC transporter ATP-binding protein, at 3,441,428 to 3,441,559
_RS15840
DZA65_RS15845: DZA65_RS15845 - YkgJ family cysteine cluster protein, at 3,441,773 to 3,442,537
_RS15845
DZA65_RS15850: DZA65_RS15850 - histidine utilization repressor, at 3,442,833 to 3,443,576
_RS15850
DZA65_RS15855: DZA65_RS15855 - histidine ammonia-lyase, at 3,443,555 to 3,445,141
_RS15855
DZA65_RS15860: DZA65_RS15860 - ATP-binding cassette domain-containing protein, at 3,445,151 to 3,445,933
_RS15860
Group
Condition
DZA65
_RS15840
DZA65
_RS15845
DZA65
_RS15850
DZA65
_RS15855
DZA65
_RS15860
stress
3.75mM_PTB
-0.2
-0.1
-0.6
-0.2
-0.1
control
LB
-0.5
+0.1
-0.0
-0.1
-0.5
plant
Stem-Upstate
+0.1
+0.1
-0.1
-0.1
-1.0
stress
3.75mM_PTB
-0.3
+0.1
-0.1
+0.1
-0.7
plant
Atlantic
-0.3
+0.1
-0.1
-0.2
-0.2
carbon source
M9+sucrose
-0.0
-0.2
-0.4
+0.2
-0.2
plant
Stem-Atlantic
+0.1
-0.1
-0.3
-0.1
-0.3
plant
Stem-Atlantic
-0.5
-0.4
+0.2
-0.0
+0.2
plant
Norland
+0.2
-0.1
-0.3
-0.2
-0.1
carbon source
M9+glycerol
+0.2
+0.1
-0.2
-0.0
-0.4
plant
Atlantic
-0.2
+0.2
-0.1
+0.2
-0.4
stress
1.88mM_PTB
+0.1
+0.1
+0.1
+0.1
-0.5
plant
Upstate
-0.3
-0.2
+0.1
-0.1
+0.2
plant
Upstate
+0.3
+0.1
-0.0
-0.1
-0.5
plant
Stem-Norland
+0.1
-0.3
+0.6
-0.1
-0.4
plant
Upstate
+0.4
-0.1
-0.1
-0.3
+0.0
plant
Stem-Upstate
-0.0
-0.5
+0.4
-0.1
+0.2
plant
Upstate
+0.1
+0.0
+0.1
-0.4
+0.2
plant
Stem-Norland
+0.1
-0.2
+0.3
-0.3
+0.1
plant
Stem-Upstate
+0.2
-0.1
+0.2
-0.1
-0.3
control
LB
+0.2
+0.1
+0.2
-0.1
-0.3
plant
Stem-Norland
+0.3
-0.2
+0.3
-0.2
-0.1
plant
Stem-Norland
+0.4
-0.0
+0.3
-0.3
-0.2
plant
Atlantic
-0.0
-0.1
-0.2
-0.2
+0.6
plant
Stem-Norland
-0.2
-0.2
+0.7
+0.1
+0.1
plant
Stem-Upstate
-0.0
-0.6
+0.6
+0.3
+0.2
plant
Norland
+0.1
+0.3
+0.2
-0.1
+0.1
plant
Stem-Upstate
+0.3
-0.4
+0.2
+0.0
+0.5
plant
Stem-Upstate
-0.1
-0.1
+0.6
-0.0
+0.2
plant
Stem-Norland
+0.4
+0.0
+0.2
+0.3
+0.2
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