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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS15760 and DZA65_RS15765 are separated by 134 nucleotides
DZA65_RS15765 and DZA65_RS15770 are separated by 5 nucleotides
DZA65_RS15770 and DZA65_RS15775 are separated by 10 nucleotides
DZA65_RS15775 and DZA65_RS15780 are separated by 74 nucleotides
DZA65_RS15760: DZA65_RS15760 - beta-galactosidase, at 3,421,723 to 3,423,780
_RS15760
DZA65_RS15765: DZA65_RS15765 - galactosidase, at 3,423,915 to 3,425,114
_RS15765
DZA65_RS15770: DZA65_RS15770 - sugar ABC transporter permease, at 3,425,120 to 3,426,016
_RS15770
DZA65_RS15775: DZA65_RS15775 - sugar ABC transporter permease, at 3,426,027 to 3,427,334
_RS15775
DZA65_RS15780: DZA65_RS15780 - extracellular solute-binding protein, at 3,427,409 to 3,428,662
_RS15780
Group
Condition
DZA65
_RS15760
DZA65
_RS15765
DZA65
_RS15770
DZA65
_RS15775
DZA65
_RS15780
plant
Atlantic
-0.6
-0.5
-0.3
-0.3
-0.4
plant
Atlantic
-0.9
-0.4
-0.2
-0.2
-0.3
plant
Upstate
-0.8
-0.5
+0.0
-0.1
-0.4
plant
Norland
-0.5
-0.3
-0.2
-0.4
-0.3
plant
Norland
-0.4
-0.4
-0.3
-0.3
-0.2
plant
Upstate
-0.4
-0.4
-0.2
-0.3
-0.3
plant
Upstate
-0.8
-0.4
+0.2
-0.4
-0.3
plant
Atlantic
-0.6
-0.4
-0.0
-0.2
-0.4
plant
Upstate
-0.3
-0.4
-0.2
-0.2
-0.4
plant
Norland
-0.4
-0.3
-0.1
-0.2
-0.3
carbon source
M9+polygalacturonate
-0.1
-0.4
-0.2
-0.3
-0.3
plant
Atlantic
-0.3
-0.4
-0.1
-0.2
-0.3
plant
Upstate
-0.4
-0.5
-0.1
-0.1
-0.2
plant
Atlantic
-0.3
-0.2
-0.2
-0.1
-0.4
plant
Norland
-0.4
-0.3
-0.1
-0.0
-0.3
plant
Upstate
-0.3
-0.3
-0.2
-0.2
-0.2
plant
Norland
-0.4
-0.3
-0.1
-0.0
-0.2
carbon source
M9+polygalacturonate
-0.1
-0.4
-0.1
-0.2
-0.2
plant
Norland
-0.2
-0.1
-0.0
-0.2
-0.4
plant
Stem-Norland
-0.4
-0.2
-0.4
-0.0
+0.1
plant
Stem-Norland
-0.0
+0.0
-0.4
+0.1
-0.6
carbon source
M9+polygalacturonate
-0.1
-0.4
+0.0
-0.2
-0.2
plant
Stem-Norland
-0.1
-0.2
-0.2
-0.2
-0.3
plant
Stem-Atlantic
-0.0
-0.4
-0.2
-0.0
-0.1
plant
Stem-Upstate
-0.1
-0.2
-0.3
+0.1
-0.2
plant
Stem-Upstate
-0.1
-0.3
-0.2
+0.1
+0.0
plant
Stem-Norland
-0.2
-0.4
+0.2
-0.3
+0.2
control
PDB
-0.2
-0.2
-0.2
+0.1
+0.0
plant
Stem-Upstate
+0.1
-0.1
-0.3
+0.4
-0.3
plant
Stem-Upstate
+0.3
+0.1
-0.1
-0.1
-0.1
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