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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS15380 and DZA65_RS15385 are separated by 228 nucleotides
DZA65_RS15385 and DZA65_RS15390 overlap by 14 nucleotides
DZA65_RS15390 and DZA65_RS15395 are separated by 201 nucleotides
DZA65_RS15395 and DZA65_RS15400 are separated by 14 nucleotides
DZA65_RS15380: DZA65_RS15380 - 4-phosphoerythronate dehydrogenase PdxB, at 3,333,272 to 3,334,405
_RS15380
DZA65_RS15385: DZA65_RS15385 - sensor histidine kinase, at 3,334,634 to 3,336,025
_RS15385
DZA65_RS15390: DZA65_RS15390 - transcriptional regulator TctD, at 3,336,012 to 3,336,686
_RS15390
DZA65_RS15395: DZA65_RS15395 - tripartite tricarboxylate transporter substrate binding protein, at 3,336,888 to 3,337,865
_RS15395
DZA65_RS15400: DZA65_RS15400 - tripartite tricarboxylate transporter TctB family protein, at 3,337,880 to 3,338,308
_RS15400
Group
Condition
DZA65
_RS15380
DZA65
_RS15385
DZA65
_RS15390
DZA65
_RS15395
DZA65
_RS15400
control
LB
-2.7
-0.2
-0.2
+0.0
-0.2
carbon source
M9+polygalacturonate
-2.9
-0.1
-0.1
-0.0
-0.1
carbon source
M9+polygalacturonate
-2.8
+0.0
-0.0
+0.1
-0.2
control
LB
-2.7
+0.0
-0.0
+0.0
-0.0
control
LB
-2.5
+0.0
-0.1
+0.0
+0.1
control
PDB
-2.5
+0.1
-0.0
+0.1
+0.1
control
PDB
-2.3
+0.1
+0.0
+0.0
-0.1
carbon source
M9+polygalacturonate
-2.6
+0.0
+0.1
+0.1
+0.1
control
PDB
-2.2
+0.2
-0.1
-0.1
+0.1
carbon source
M9+glycerol
-1.4
-0.1
-0.0
-0.1
-0.4
plant
Stem-Norland
-0.7
-0.5
-0.2
-0.2
-0.4
control
PDB
-2.0
+0.0
+0.1
-0.1
+0.1
control
PDB
-1.5
-0.1
+0.1
-0.1
+0.1
carbon source
M9+starch
-1.5
-0.1
+0.1
+0.2
-0.1
plant
Stem-Atlantic
-1.3
-0.2
+0.1
-0.2
+0.2
plant
Stem-Atlantic
-0.7
-0.1
-0.1
+0.0
-0.4
plant
Stem-Atlantic
-0.8
-0.3
-0.2
-0.0
+0.1
carbon source
M9+sucrose
-1.6
+0.1
+0.2
+0.0
-0.0
control
PDB
-1.5
+0.1
-0.1
+0.2
+0.1
plant
Stem-Norland
-0.3
-0.6
-0.3
-0.1
+0.1
carbon source
M9+glycerol
-1.2
+0.3
-0.2
+0.1
-0.2
carbon source
M9+sucrose
-1.4
+0.1
+0.1
+0.1
+0.0
control
LB
-0.9
-0.1
-0.2
+0.3
-0.1
carbon source
M9+starch
-1.2
+0.2
+0.0
+0.1
-0.0
plant
Stem-Upstate
-0.3
-0.3
-0.0
+0.3
-0.5
carbon source
M9+starch
-1.4
+0.1
+0.0
+0.2
+0.2
carbon source
M9+glycerol
-1.2
+0.0
-0.0
-0.1
+0.4
carbon source
M9+sucrose
-1.1
+0.1
+0.1
+0.1
-0.1
carbon source
M9+glycerol
-0.9
+0.2
-0.0
+0.2
+0.1
plant
Stem-Upstate
-0.7
-0.3
-0.1
+0.3
+0.3
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