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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS14890 and DZA65_RS14895 overlap by 23 nucleotides
DZA65_RS14895 and DZA65_RS14900 overlap by 14 nucleotides
DZA65_RS14900 and DZA65_RS14905 are separated by 3 nucleotides
DZA65_RS14905 and DZA65_RS14910 are separated by 597 nucleotides
DZA65_RS14890: DZA65_RS14890 - hydrogenase 2 large subunit, at 3,244,246 to 3,245,952
_RS14890
DZA65_RS14895: DZA65_RS14895 - Ni/Fe-hydrogenase cytochrome b subunit, at 3,245,930 to 3,247,129
_RS14895
DZA65_RS14900: DZA65_RS14900 - hydrogenase 2 operon protein HybA, at 3,247,116 to 3,248,132
_RS14900
DZA65_RS14905: DZA65_RS14905 - hydrogenase 2 small subunit, at 3,248,136 to 3,249,263
_RS14905
DZA65_RS14910: DZA65_RS14910 - ABC-F family ATPase, at 3,249,861 to 3,251,453
_RS14910
Group
Condition
DZA65
_RS14890
DZA65
_RS14895
DZA65
_RS14900
DZA65
_RS14905
DZA65
_RS14910
plant
Upstate
-0.2
-0.0
-0.5
-0.0
-0.1
plant
Stem-Norland
-0.1
+0.2
-0.1
-0.4
-0.4
plant
Stem-Norland
-0.2
-0.1
-0.1
+0.1
-0.4
plant
Stem-Upstate
+0.0
-0.3
-0.2
-0.2
-0.0
plant
Upstate
-0.1
-0.2
-0.2
-0.3
+0.0
plant
Norland
+0.0
-0.1
-0.5
-0.1
-0.1
plant
Stem-Upstate
+0.1
-0.2
-0.1
-0.1
-0.5
plant
Stem-Upstate
-0.1
-0.1
-0.3
+0.1
-0.2
plant
Stem-Atlantic
+0.1
-0.1
-0.2
+0.1
-0.4
plant
Stem-Atlantic
-0.1
-0.0
-0.2
-0.1
-0.2
carbon source
M9+sucrose
-0.3
-0.1
-0.1
-0.1
-0.1
plant
Stem-Atlantic
+0.0
+0.1
-0.3
-0.1
-0.3
plant
Stem-Atlantic
-0.1
-0.0
-0.2
-0.1
-0.3
plant
Upstate
-0.1
-0.4
-0.3
+0.0
+0.1
plant
Norland
-0.2
-0.1
-0.3
-0.1
+0.1
plant
Stem-Atlantic
+0.1
+0.0
+0.1
-0.3
-0.3
plant
Stem-Upstate
-0.1
-0.1
+0.1
-0.0
-0.3
plant
Stem-Norland
-0.1
+0.1
-0.2
-0.0
-0.1
plant
Stem-Norland
+0.2
+0.1
-0.0
-0.2
-0.4
plant
Upstate
-0.2
-0.2
-0.2
-0.1
+0.2
plant
Stem-Upstate
+0.2
-0.1
+0.0
-0.1
-0.3
plant
Atlantic
+0.0
-0.2
-0.2
+0.1
-0.0
stress
3.75mM_PTB
-0.2
+0.2
-0.1
+0.0
-0.1
plant
Stem-Norland
-0.2
+0.2
-0.0
+0.2
-0.3
plant
Stem-Norland
-0.1
+0.0
+0.4
-0.3
-0.2
plant
Stem-Upstate
+0.2
-0.2
-0.2
+0.2
-0.2
carbon source
M9+glycerol
+0.2
-0.0
-0.2
-0.2
+0.1
plant
Atlantic
-0.1
-0.2
-0.2
+0.3
+0.0
control
PDB
-0.1
+0.0
+0.0
+0.2
+0.3
plant
Upstate
+0.2
+0.3
+0.1
+0.2
+0.2
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