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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS14690 and DZA65_RS14695 are separated by 660 nucleotides
DZA65_RS14695 and DZA65_RS14700 are separated by 205 nucleotides
DZA65_RS14700 and DZA65_RS14705 overlap by 7 nucleotides
DZA65_RS14705 and DZA65_RS14710 are separated by 491 nucleotides
DZA65_RS14690: DZA65_RS14690 - TetR/AcrR family transcriptional regulator, at 3,193,651 to 3,194,211
_RS14690
DZA65_RS14695: DZA65_RS14695 - glycosyltransferase, at 3,194,872 to 3,196,149
_RS14695
DZA65_RS14700: DZA65_RS14700 - gamma-glutamyltransferase, at 3,196,355 to 3,198,118
_RS14700
DZA65_RS14705: DZA65_RS14705 - methyl-accepting chemotaxis protein, at 3,198,112 to 3,199,710
_RS14705
DZA65_RS14710: DZA65_RS14710 - LD-carboxypeptidase, at 3,200,202 to 3,200,501
_RS14710
Group
Condition
DZA65
_RS14690
DZA65
_RS14695
DZA65
_RS14700
DZA65
_RS14705
DZA65
_RS14710
plant
Stem-Upstate
+0.2
+0.2
-0.2
-0.0
-1.3
plant
Stem-Upstate
-0.4
+0.4
-0.1
-0.3
-0.7
plant
Stem-Norland
-0.2
-0.1
+0.1
-0.0
-0.8
plant
Stem-Norland
-0.1
-0.4
-0.2
+0.1
-0.3
plant
Stem-Norland
-0.2
+0.4
-0.0
-0.1
-0.8
plant
Upstate
-0.1
-0.2
+0.0
-0.2
-0.3
plant
Stem-Norland
-0.2
-0.1
+0.0
-0.2
-0.2
plant
Atlantic
+0.2
-0.0
-0.0
-0.2
-0.6
control
LB
-0.0
-0.1
-0.0
+0.1
-0.6
plant
Stem-Norland
-0.2
+0.2
+0.3
-0.3
-0.6
plant
Norland
-0.0
+0.0
-0.1
+0.2
-0.7
plant
Upstate
+0.1
-0.2
-0.0
-0.0
-0.4
control
LB
-0.1
+0.1
+0.0
+0.1
-0.5
plant
Stem-Upstate
+0.1
+0.4
-0.1
+0.0
-0.7
plant
Stem-Upstate
+0.1
-0.2
+0.2
-0.0
-0.3
plant
Norland
+0.1
-0.0
+0.0
+0.1
-0.5
plant
Stem-Norland
+0.2
+0.2
-0.0
-0.1
-0.5
carbon source
M9+polygalacturonate
+0.1
-0.1
+0.1
+0.1
-0.5
control
PDB
+0.2
-0.1
+0.1
-0.1
-0.2
plant
Stem-Atlantic
-0.1
+0.3
-0.1
-0.1
-0.2
plant
Stem-Atlantic
+0.0
+0.3
-0.1
+0.0
-0.4
plant
Norland
+0.1
+0.2
+0.1
-0.3
-0.2
plant
Stem-Atlantic
+0.1
+0.4
-0.1
-0.0
-0.5
plant
Stem-Atlantic
-0.2
+0.4
+0.0
-0.3
+0.0
plant
Stem-Upstate
+0.1
+0.3
-0.0
-0.5
+0.0
carbon source
M9+starch
-0.1
-0.3
-0.0
+0.0
+0.5
plant
Stem-Atlantic
-0.2
+0.2
-0.1
-0.1
+0.2
carbon source
M9+glycerol
+0.2
+0.2
+0.0
+0.0
-0.2
plant
Norland
+0.1
+0.0
+0.1
-0.2
+0.4
plant
Stem-Upstate
+0.5
+0.6
+0.0
+0.1
-0.1
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