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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS14425 and DZA65_RS14430 overlap by 11 nucleotides
DZA65_RS14430 and DZA65_RS14435 overlap by 17 nucleotides
DZA65_RS14435 and DZA65_RS14440 are separated by 65 nucleotides
DZA65_RS14440 and DZA65_RS14445 are separated by 35 nucleotides
DZA65_RS14425: DZA65_RS14425 - TrbI/VirB10 family protein, at 3,145,291 to 3,146,532
_RS14425
DZA65_RS14430: DZA65_RS14430 - P-type DNA transfer ATPase VirB11, at 3,146,522 to 3,147,550
_RS14430
DZA65_RS14435: DZA65_RS14435 - hypothetical protein, at 3,147,534 to 3,147,938
_RS14435
DZA65_RS14440: DZA65_RS14440 - kikA from plasmid origin, at 3,148,004 to 3,148,309
_RS14440
DZA65_RS14445: DZA65_RS14445 - hypothetical protein, at 3,148,345 to 3,148,620
_RS14445
Group
Condition
DZA65
_RS14425
DZA65
_RS14430
DZA65
_RS14435
DZA65
_RS14440
DZA65
_RS14445
control
LB
-0.2
-0.2
-0.2
-0.7
-0.1
control
PDB
-0.0
-0.1
-0.2
-0.3
-0.7
stress
3.75mM_PTB
+0.3
+0.1
+0.1
-0.5
-1.1
carbon source
M9+starch
+0.0
-0.0
-0.3
-0.3
-0.4
control
PDB
+0.0
-0.1
-0.1
-0.3
-0.5
plant
Norland
-0.2
-0.0
-0.2
-0.3
-0.3
plant
Norland
-0.2
-0.0
+0.0
-0.3
-0.4
plant
Atlantic
+0.0
+0.0
-0.1
-0.3
-0.4
plant
Stem-Norland
+0.0
+0.1
+0.0
-0.2
-0.7
plant
Atlantic
-0.1
+0.1
+0.2
-0.3
-0.5
plant
Upstate
-0.1
+0.1
-0.1
+0.3
-0.7
plant
Stem-Norland
+0.1
-0.1
+0.6
-0.5
-0.5
plant
Atlantic
+0.1
+0.1
-0.4
-0.6
+0.5
plant
Stem-Upstate
-0.1
+0.2
+0.6
+0.5
-1.2
plant
Upstate
-0.0
+0.3
+0.2
-0.4
-0.0
plant
Stem-Upstate
-0.1
+0.3
+0.1
-1.5
+1.5
plant
Stem-Norland
-0.2
+0.2
+0.3
+0.6
-0.3
plant
Stem-Norland
-0.0
+0.1
-0.0
-0.6
+1.1
plant
Stem-Upstate
+0.1
+0.2
+0.2
+0.6
-0.3
plant
Stem-Upstate
+0.3
+0.4
+0.4
-0.2
-0.1
plant
Stem-Atlantic
-0.0
+0.2
+0.1
+0.4
+0.3
control
LB
-0.0
+0.1
+0.5
-0.2
+0.5
stress
1.88mM_PTB
+0.1
+0.1
+0.3
+0.3
+0.2
carbon source
M9+glycerol
-0.0
+0.0
+0.2
+0.1
+0.7
control
LB
+0.1
+0.1
+0.2
+0.2
+0.4
plant
Stem-Norland
+0.2
+0.1
+0.3
-0.6
+1.1
plant
Stem-Norland
+0.2
+0.1
+0.1
-0.1
+1.0
plant
Stem-Norland
+0.2
+0.1
+0.2
+0.5
+0.4
plant
Stem-Upstate
-0.1
-0.1
+0.6
+0.4
+0.8
plant
Stem-Upstate
+0.1
+0.1
+0.2
+0.7
+1.8
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