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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS14295 and DZA65_RS14300 are separated by 325 nucleotides
DZA65_RS14300 and DZA65_RS14305 are separated by 523 nucleotides
DZA65_RS14305 and DZA65_RS14310 are separated by 75 nucleotides
DZA65_RS14310 and DZA65_RS14315 are separated by 384 nucleotides
DZA65_RS14295: DZA65_RS14295 - DUF2594 family protein, at 3,122,303 to 3,122,527
_RS14295
DZA65_RS14300: DZA65_RS14300 - tRNA-Lys, at 3,122,853 to 3,122,928
_RS14300
DZA65_RS14305: DZA65_RS14305 - D-serine/D-alanine/glycine transporter, at 3,123,452 to 3,124,855
_RS14305
DZA65_RS14310: DZA65_RS14310 - LysR family transcriptional regulator, at 3,124,931 to 3,125,197
_RS14310
DZA65_RS14315: DZA65_RS14315 - tRNA-Asn, at 3,125,582 to 3,125,657
_RS14315
Group
Condition
DZA65
_RS14295
DZA65
_RS14300
DZA65
_RS14305
DZA65
_RS14310
DZA65
_RS14315
plant
Stem-Upstate
-0.5
N.D.
+0.1
-2.4
N.D.
carbon source
M9+glycerol
-0.4
N.D.
+0.0
-2.4
N.D.
plant
Stem-Norland
-1.0
N.D.
-0.0
-1.4
N.D.
plant
Stem-Norland
-0.4
N.D.
+0.2
-1.9
N.D.
carbon source
M9+glycerol
-1.1
N.D.
+0.0
-0.8
N.D.
control
PDB
-0.7
N.D.
-0.0
-0.9
N.D.
stress
1.88mM_PTB
-0.6
N.D.
+0.0
-0.9
N.D.
plant
Norland
-0.4
N.D.
+0.1
-1.1
N.D.
stress
1.88mM_PTB
-0.5
N.D.
-0.3
-0.5
N.D.
control
PDB
-0.2
N.D.
-0.0
-0.9
N.D.
stress
3.75mM_PTB
-0.9
N.D.
+0.0
-0.3
N.D.
plant
Stem-Atlantic
-0.2
N.D.
-0.0
-0.9
N.D.
plant
Stem-Upstate
+0.4
N.D.
-0.3
-1.1
N.D.
plant
Stem-Upstate
-1.6
N.D.
+0.1
+0.7
N.D.
plant
Upstate
+0.2
N.D.
-0.0
-0.9
N.D.
carbon source
M9+sucrose
+0.3
N.D.
-0.1
-0.7
N.D.
carbon source
M9+polygalacturonate
+0.7
N.D.
-0.0
-1.0
N.D.
plant
Stem-Norland
+0.4
N.D.
+0.2
-0.6
N.D.
plant
Upstate
-0.6
N.D.
+0.0
+0.7
N.D.
plant
Stem-Upstate
-1.0
N.D.
+0.2
+1.0
N.D.
carbon source
M9+polygalacturonate
+0.9
N.D.
-0.1
-0.5
N.D.
plant
Stem-Norland
+0.7
N.D.
-0.0
-0.3
N.D.
plant
Stem-Upstate
-0.5
N.D.
-0.0
+1.0
N.D.
plant
Stem-Atlantic
-0.1
N.D.
+0.0
+0.9
N.D.
carbon source
M9+starch
+0.5
N.D.
+0.0
+0.4
N.D.
plant
Atlantic
+0.4
N.D.
+0.0
+0.6
N.D.
plant
Atlantic
+1.4
N.D.
+0.0
-0.4
N.D.
plant
Norland
+0.3
N.D.
-0.2
+1.0
N.D.
control
LB
+0.6
N.D.
+0.0
+0.6
N.D.
plant
Stem-Norland
+0.2
N.D.
+0.4
+0.8
N.D.
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