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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS14210 and DZA65_RS14215 are separated by 25 nucleotides
DZA65_RS14215 and DZA65_RS14220 are separated by 45 nucleotides
DZA65_RS14220 and DZA65_RS14225 overlap by 8 nucleotides
DZA65_RS14225 and DZA65_RS14230 overlap by 4 nucleotides
DZA65_RS14210: DZA65_RS14210 - hypothetical protein, at 3,067,557 to 3,068,723
_RS14210
DZA65_RS14215: DZA65_RS14215 - acyl carrier protein, at 3,068,749 to 3,069,018
_RS14215
DZA65_RS14220: DZA65_RS14220 - SDR family NAD(P)-dependent oxidoreductase, at 3,069,064 to 3,089,739
_RS14220
DZA65_RS14225: DZA65_RS14225 - LLM class flavin-dependent oxidoreductase, at 3,089,732 to 3,090,865
_RS14225
DZA65_RS14230: DZA65_RS14230 - KR domain-containing protein, at 3,090,862 to 3,098,496
_RS14230
Group
Condition
DZA65
_RS14210
DZA65
_RS14215
DZA65
_RS14220
DZA65
_RS14225
DZA65
_RS14230
carbon source
M9+glycerol
-0.1
-0.8
-0.0
+0.1
-0.1
carbon source
M9+glycerol
-0.2
-0.4
-0.0
-0.1
-0.1
plant
Norland
-0.2
-0.2
-0.0
-0.2
-0.0
control
LB
-0.2
-0.3
-0.1
-0.0
-0.1
stress
1.88mM_PTB
-0.2
-0.6
-0.0
+0.3
-0.0
plant
Atlantic
-0.1
-0.4
-0.0
+0.1
+0.0
control
PDB
-0.4
+0.1
+0.0
-0.1
+0.0
control
PDB
-0.1
+0.1
-0.0
-0.2
-0.0
plant
Stem-Norland
+0.1
-0.4
+0.0
+0.1
+0.0
plant
Stem-Upstate
-0.2
-0.3
+0.1
+0.1
+0.1
plant
Upstate
-0.2
+0.1
+0.0
-0.2
+0.1
plant
Stem-Upstate
-0.0
-0.3
+0.1
+0.2
+0.0
plant
Stem-Upstate
+0.2
-0.3
+0.1
+0.0
+0.0
stress
3.75mM_PTB
-0.1
+0.4
-0.0
-0.1
-0.1
plant
Stem-Norland
-0.3
+0.4
+0.1
-0.1
-0.0
plant
Atlantic
-0.1
+0.3
+0.1
-0.1
+0.1
plant
Stem-Norland
-0.1
+0.3
+0.1
-0.1
+0.1
plant
Atlantic
+0.2
+0.3
+0.1
-0.1
+0.0
plant
Stem-Atlantic
-0.2
+0.4
-0.0
+0.2
+0.0
plant
Norland
-0.1
+0.3
+0.0
+0.1
+0.0
plant
Stem-Atlantic
-0.0
+0.3
+0.1
+0.2
+0.1
plant
Stem-Norland
-0.1
+0.5
-0.0
+0.2
+0.1
plant
Stem-Norland
+0.2
+0.3
+0.1
-0.1
+0.1
plant
Stem-Norland
+0.1
+0.4
+0.0
+0.0
+0.0
plant
Norland
+0.2
+0.6
-0.0
-0.0
-0.0
plant
Upstate
+0.0
+0.6
+0.1
+0.1
+0.1
plant
Stem-Norland
+0.3
+0.4
+0.1
-0.1
+0.1
plant
Stem-Atlantic
+0.2
+0.5
+0.1
+0.2
+0.1
plant
Stem-Norland
+0.3
+0.2
+0.2
+0.2
+0.4
plant
Stem-Upstate
+0.8
-0.1
+0.2
+0.4
+0.2
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