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Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS14115 and DZA65_RS14120 are separated by 740 nucleotides
DZA65_RS14120 and DZA65_RS14125 are separated by 69 nucleotides
DZA65_RS14125 and DZA65_RS14130 are separated by 698 nucleotides
DZA65_RS14130 and DZA65_RS14135 overlap by 17 nucleotides
DZA65_RS14115: DZA65_RS14115 - cytochrome b562, at 3,029,518 to 3,029,895
_RS14115
DZA65_RS14120: DZA65_RS14120 - cellulase family glycosylhydrolase, at 3,030,636 to 3,031,916
_RS14120
DZA65_RS14125: DZA65_RS14125 - pectate lyase, at 3,031,986 to 3,033,263
_RS14125
DZA65_RS14130: DZA65_RS14130 - holin, at 3,033,962 to 3,034,273
_RS14130
DZA65_RS14135: DZA65_RS14135 - glycoside hydrolase family protein, at 3,034,257 to 3,034,751
_RS14135
Group
Condition
DZA65
_RS14115
DZA65
_RS14120
DZA65
_RS14125
DZA65
_RS14130
DZA65
_RS14135
plant
Stem-Upstate
+0.1
-0.1
+0.3
-0.2
-1.5
stress
1.88mM_PTB
-0.1
-0.1
-0.0
-0.6
-0.6
control
LB
-0.3
-0.1
-0.0
-0.5
-0.3
plant
Stem-Upstate
+0.2
+0.0
-0.1
+0.6
-1.4
stress
3.75mM_PTB
+0.3
-0.1
-0.0
-0.1
-0.6
carbon source
M9+glycerol
+0.3
+0.0
-0.0
-0.3
-0.6
carbon source
M9+polygalacturonate
+0.0
+0.1
-0.1
+0.3
-0.7
control
PDB
-0.3
-0.3
-0.1
-0.0
+0.6
control
LB
+0.1
+0.0
-0.2
-0.4
+0.4
plant
Stem-Upstate
+0.3
-0.1
-0.0
+0.3
-0.6
plant
Stem-Upstate
+0.7
+0.1
+0.2
-0.2
-0.9
carbon source
M9+polygalacturonate
-0.1
-0.0
-0.2
+0.5
-0.2
plant
Stem-Atlantic
-0.5
-0.0
+0.1
+0.3
+0.2
plant
Atlantic
-0.3
+0.0
+0.0
-0.3
+0.7
plant
Stem-Norland
-0.0
-0.0
+0.3
+0.6
-0.6
plant
Upstate
+0.2
+0.0
+0.2
+0.2
-0.3
plant
Stem-Norland
-0.1
+0.1
+0.1
-0.4
+0.7
plant
Stem-Norland
+0.3
+0.1
-0.2
-0.2
+0.5
plant
Norland
-0.2
-0.0
+0.2
+0.5
+0.0
plant
Stem-Norland
-0.5
+0.0
-0.1
+0.3
+0.8
plant
Stem-Atlantic
-0.4
+0.1
+0.2
+0.3
+0.4
plant
Norland
+0.4
+0.1
+0.0
+0.5
-0.4
plant
Stem-Norland
+0.3
+0.2
+0.1
-0.2
+0.4
carbon source
M9+sucrose
+0.5
+0.1
-0.2
+0.2
+0.3
plant
Stem-Upstate
+0.0
-0.1
+0.0
+0.2
+0.7
plant
Stem-Atlantic
+0.1
+0.1
-0.2
+0.5
+0.4
plant
Stem-Atlantic
+0.1
+0.2
+0.0
+0.4
+0.2
plant
Upstate
+0.4
-0.0
+0.2
+0.3
+0.2
plant
Stem-Norland
+0.2
-0.1
+0.3
+0.7
-0.0
plant
Stem-Upstate
+0.6
+0.2
+0.2
-0.1
+1.7
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