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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS13925 and DZA65_RS13930 are separated by 5 nucleotides
DZA65_RS13930 and DZA65_RS13935 overlap by 8 nucleotides
DZA65_RS13935 and DZA65_RS13940 overlap by 1 nucleotides
DZA65_RS13940 and DZA65_RS13945 overlap by 4 nucleotides
DZA65_RS13925: DZA65_RS13925 - flagellar basal body-associated protein FliL, at 2,992,041 to 2,992,529
_RS13925
DZA65_RS13930: DZA65_RS13930 - flagellar motor switch protein FliM, at 2,992,535 to 2,993,551
_RS13930
DZA65_RS13935: DZA65_RS13935 - flagellar motor switch protein FliN, at 2,993,544 to 2,993,960
_RS13935
DZA65_RS13940: DZA65_RS13940 - flagellar biosynthetic protein FliO, at 2,993,960 to 2,994,376
_RS13940
DZA65_RS13945: DZA65_RS13945 - flagellar type III secretion system pore protein FliP, at 2,994,373 to 2,995,149
_RS13945
Group
Condition
DZA65
_RS13925
DZA65
_RS13930
DZA65
_RS13935
DZA65
_RS13940
DZA65
_RS13945
plant
Stem-Atlantic
-3.8
-3.6
-3.4
-3.8
-3.6
plant
Stem-Atlantic
-3.5
-3.6
-3.5
-3.5
-3.1
plant
Stem-Atlantic
-3.2
-3.3
-3.1
-3.5
-3.1
plant
Stem-Upstate
-3.0
-3.0
-3.0
-3.2
-3.3
plant
Stem-Atlantic
-3.2
-3.0
-2.0
-3.3
-3.3
plant
Stem-Norland
-2.7
-3.0
-2.1
-3.5
-3.0
plant
Stem-Upstate
-3.0
-2.8
-2.7
-3.0
-2.8
plant
Stem-Norland
-2.4
-3.0
-2.7
-2.9
-3.0
plant
Stem-Norland
-3.0
-2.7
-2.4
-2.8
-2.9
plant
Stem-Norland
-3.1
-2.3
-2.0
-3.1
-2.7
plant
Stem-Norland
-2.5
-2.7
-2.3
-2.5
-2.7
plant
Stem-Upstate
-2.7
-2.6
-2.6
-2.1
-2.8
plant
Stem-Atlantic
-2.2
-2.5
-2.3
-2.9
-2.6
plant
Stem-Upstate
-2.5
-2.7
-2.1
-2.4
-2.7
plant
Stem-Norland
-2.1
-2.6
-2.4
-2.7
-2.4
plant
Stem-Atlantic
-2.4
-2.5
-2.2
-2.5
-2.5
plant
Stem-Norland
-1.9
-2.0
-2.0
-2.4
-1.9
plant
Stem-Atlantic
-1.9
-1.9
-2.0
-1.8
-1.7
plant
Stem-Upstate
-1.5
-1.7
-1.5
-2.0
-1.9
plant
Stem-Upstate
-1.3
-1.5
-1.6
-1.6
-1.5
plant
Stem-Upstate
-1.7
-1.8
-0.8
-1.4
-1.6
plant
Stem-Norland
-1.8
-1.6
-0.6
-1.2
-1.2
carbon source
M9+glycerol
+0.6
+0.6
+0.9
+0.6
+0.5
control
LB
+0.7
+0.6
+0.7
+0.8
+0.6
carbon source
M9+polygalacturonate
+0.6
+0.7
+0.7
+0.7
+0.7
carbon source
M9+polygalacturonate
+0.6
+0.7
+0.7
+0.7
+0.7
carbon source
M9+polygalacturonate
+0.6
+0.8
+0.8
+0.9
+0.9
carbon source
M9+glycerol
+1.2
+1.3
+1.4
+1.2
+1.2
carbon source
M9+glycerol
+1.3
+1.3
+1.1
+1.4
+1.4
carbon source
M9+glycerol
+1.3
+1.4
+1.4
+1.4
+1.4
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