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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS13800 and DZA65_RS13805 are separated by 182 nucleotides
DZA65_RS13805 and DZA65_RS13810 are separated by 436 nucleotides
DZA65_RS13810 and DZA65_RS13815 are separated by 123 nucleotides
DZA65_RS13815 and DZA65_RS13820 are separated by 54 nucleotides
DZA65_RS13800: DZA65_RS13800 - RpiB/LacA/LacB family sugar-phosphate isomerase, at 2,963,022 to 2,963,660
_RS13800
DZA65_RS13805: DZA65_RS13805 - tRNA-Ser, at 2,963,843 to 2,963,932
_RS13805
DZA65_RS13810: DZA65_RS13810 - HAMP domain-containing protein, at 2,964,369 to 2,965,973
_RS13810
DZA65_RS13815: DZA65_RS13815 - IS4 family transposase, at 2,966,097 to 2,967,222
_RS13815
DZA65_RS13820: DZA65_RS13820 - phosphate starvation-inducible protein PhoH, at 2,967,277 to 2,968,065
_RS13820
Group
Condition
DZA65
_RS13800
DZA65
_RS13805
DZA65
_RS13810
DZA65
_RS13815
DZA65
_RS13820
plant
Stem-Norland
-0.7
N.D.
+0.4
-0.9
+0.1
plant
Stem-Atlantic
-0.7
N.D.
+0.0
-0.2
-0.1
plant
Stem-Norland
-0.9
N.D.
+0.2
+0.1
-0.3
plant
Stem-Norland
-1.0
N.D.
+0.2
-0.3
+0.2
plant
Stem-Atlantic
-0.5
N.D.
-0.0
-0.1
-0.2
plant
Upstate
-0.2
N.D.
+0.2
-0.2
-0.3
stress
1.88mM_PTB
+0.1
N.D.
+0.0
-0.5
-0.1
plant
Stem-Norland
-0.7
N.D.
+0.2
+0.0
+0.1
plant
Stem-Norland
-0.2
N.D.
-0.1
+0.3
-0.1
plant
Stem-Upstate
-0.4
N.D.
+0.3
-0.4
+0.3
plant
Stem-Atlantic
-0.4
N.D.
+0.1
+0.2
-0.1
plant
Stem-Atlantic
-0.7
N.D.
+0.2
+0.2
+0.2
carbon source
M9+starch
-0.2
N.D.
-0.2
+0.4
-0.2
plant
Stem-Norland
-0.6
N.D.
+0.2
-0.0
+0.3
plant
Stem-Norland
-0.7
N.D.
+0.1
+0.5
+0.1
plant
Stem-Atlantic
-0.4
N.D.
+0.0
+0.2
+0.2
plant
Stem-Atlantic
-0.7
N.D.
+0.2
+0.5
+0.0
plant
Upstate
-0.0
N.D.
+0.1
+0.3
-0.3
plant
Stem-Atlantic
-0.2
N.D.
+0.1
+0.4
-0.1
plant
Atlantic
-0.1
N.D.
+0.1
+0.4
-0.2
plant
Norland
-0.3
N.D.
+0.0
+0.5
+0.1
plant
Norland
-0.1
N.D.
+0.2
+0.3
-0.1
carbon source
M9+glycerol
+0.1
N.D.
-0.0
+0.5
-0.2
stress
1.88mM_PTB
-0.1
N.D.
+0.0
+0.6
-0.1
plant
Upstate
-0.0
N.D.
+0.2
+0.6
-0.2
plant
Stem-Upstate
-0.3
N.D.
+0.5
-0.1
+0.4
plant
Stem-Upstate
-0.6
N.D.
+0.2
+1.3
-0.2
plant
Stem-Norland
-0.5
N.D.
+0.0
+1.4
-0.1
plant
Stem-Upstate
+0.1
N.D.
+0.0
+0.4
+0.2
plant
Stem-Upstate
+0.4
N.D.
+0.0
+0.8
-0.1
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