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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS13580 and DZA65_RS13585 are separated by 35 nucleotides
DZA65_RS13585 and DZA65_RS13590 are separated by 194 nucleotides
DZA65_RS13590 and DZA65_RS13595 overlap by 23 nucleotides
DZA65_RS13595 and DZA65_RS13600 are separated by 21 nucleotides
DZA65_RS13580: DZA65_RS13580 - alpha/beta hydrolase, at 2,917,560 to 2,918,102
_RS13580
DZA65_RS13585: DZA65_RS13585 - beta-N-acetylhexosaminidase, at 2,918,138 to 2,919,163
_RS13585
DZA65_RS13590: DZA65_RS13590 - phosphotransferase, at 2,919,358 to 2,920,221
_RS13590
DZA65_RS13595: DZA65_RS13595 - penicillin-binding protein activator LpoB, at 2,920,199 to 2,920,792
_RS13595
DZA65_RS13600: DZA65_RS13600 - DUF1425 domain-containing protein, at 2,920,814 to 2,921,197
_RS13600
Group
Condition
DZA65
_RS13580
DZA65
_RS13585
DZA65
_RS13590
DZA65
_RS13595
DZA65
_RS13600
plant
Stem-Norland
-0.4
-0.3
-0.7
-1.1
-0.2
plant
Stem-Upstate
+0.1
-0.6
-0.8
-0.4
-0.3
stress
1.88mM_PTB
-0.1
-0.2
-0.4
-1.0
-0.1
control
LB
-0.4
-0.1
+0.3
-0.9
-0.5
plant
Upstate
-0.1
+0.1
-0.4
-1.2
+0.1
plant
Stem-Norland
-0.1
-0.4
-0.7
-0.3
+0.0
plant
Atlantic
-0.1
-0.5
-0.4
-0.4
-0.0
plant
Stem-Norland
-0.2
-0.2
-1.1
+0.0
+0.1
plant
Upstate
-0.2
+0.1
-0.1
-1.0
-0.1
carbon source
M9+glycerol
+0.0
-0.3
+0.1
-0.6
-0.4
stress
3.75mM_PTB
-0.2
-0.1
+0.1
-0.8
-0.2
stress
1.88mM_PTB
-0.1
-0.2
+0.3
-0.7
-0.2
plant
Upstate
-0.2
-0.6
+0.6
-0.5
-0.2
plant
Upstate
-0.1
-0.1
+0.4
-0.9
+0.0
control
LB
+0.0
+0.1
+0.3
-0.6
-0.3
plant
Stem-Norland
+0.3
-0.1
+0.6
-0.9
-0.1
stress
3.75mM_PTB
-0.3
+0.0
+0.5
-0.5
+0.0
stress
1.88mM_PTB
+0.1
+0.2
+0.3
-0.6
-0.2
plant
Atlantic
+0.1
-0.2
+0.5
-0.4
-0.2
plant
Stem-Atlantic
-0.2
-0.1
+0.4
-0.4
+0.2
plant
Stem-Atlantic
-0.2
+0.4
-0.1
-0.5
+0.2
plant
Stem-Atlantic
+0.2
+0.1
-0.2
-0.7
+0.6
stress
3.75mM_PTB
+0.1
-0.0
+0.6
-0.5
-0.1
plant
Stem-Atlantic
+0.0
-0.1
+0.8
-1.0
+0.3
plant
Stem-Upstate
-0.1
+0.5
+0.1
-0.6
+0.3
control
LB
+0.2
+0.3
+0.3
-0.3
-0.2
plant
Stem-Upstate
+0.0
-0.2
+0.8
-0.1
+0.3
plant
Stem-Upstate
-0.0
+0.9
+0.3
-0.2
+0.1
plant
Stem-Upstate
+0.4
+0.6
-0.2
-0.1
+0.5
plant
Stem-Norland
+0.2
+0.4
+0.3
-0.1
+0.4
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