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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS13285 and DZA65_RS13290 are separated by 98 nucleotides
DZA65_RS13290 and DZA65_RS13295 are separated by 8 nucleotides
DZA65_RS13295 and DZA65_RS13300 overlap by 26 nucleotides
DZA65_RS13300 and DZA65_RS13305 are separated by 88 nucleotides
DZA65_RS13285: DZA65_RS13285 - cysteine desulfuration protein SufE, at 2,843,796 to 2,844,212
_RS13285
DZA65_RS13290: DZA65_RS13290 - cysteine desulfurase SufS, at 2,844,311 to 2,845,552
_RS13290
DZA65_RS13295: DZA65_RS13295 - Fe-S cluster assembly protein SufD, at 2,845,561 to 2,846,853
_RS13295
DZA65_RS13300: DZA65_RS13300 - Fe-S cluster assembly ATPase SufC, at 2,846,828 to 2,847,574
_RS13300
DZA65_RS13305: DZA65_RS13305 - Fe-S cluster assembly protein SufB, at 2,847,663 to 2,849,162
_RS13305
Group
Condition
DZA65
_RS13285
DZA65
_RS13290
DZA65
_RS13295
DZA65
_RS13300
DZA65
_RS13305
carbon source
M9+glycerol
-1.5
-0.9
-0.8
-0.9
-1.2
carbon source
M9+glycerol
-1.0
-1.0
-1.0
-1.1
-1.2
carbon source
M9+glycerol
-0.4
-0.7
-0.6
-0.7
-0.8
carbon source
M9+glycerol
-0.2
-0.2
-0.3
-0.3
-0.5
carbon source
M9+glycerol
-0.1
-0.3
-0.3
-0.3
-0.4
plant
Upstate
-0.2
-0.2
-0.2
-0.2
-0.2
carbon source
M9+glycerol
-0.0
-0.3
-0.1
-0.2
-0.2
plant
Norland
-0.4
-0.3
+0.0
-0.0
-0.1
plant
Norland
-0.3
-0.3
+0.1
-0.1
-0.0
plant
Atlantic
-0.4
-0.2
-0.1
+0.1
-0.0
control
LB
-0.1
+0.1
-0.1
-0.4
+0.1
plant
Upstate
+0.2
-0.2
-0.1
-0.2
-0.0
plant
Norland
+0.2
-0.2
-0.1
-0.1
-0.1
plant
Stem-Upstate
+0.1
+0.1
-0.2
-0.3
+0.2
plant
Stem-Upstate
+0.2
-0.0
+0.2
-0.6
+0.1
plant
Stem-Atlantic
+0.2
+0.0
-0.2
-0.3
+0.1
plant
Atlantic
-0.1
+0.0
+0.4
-0.1
+0.1
plant
Stem-Upstate
+0.5
+0.2
-0.3
-0.1
-0.0
plant
Stem-Norland
-0.1
+0.1
+0.0
+0.5
-0.1
control
PDB
+0.3
+0.2
+0.0
-0.1
+0.1
plant
Stem-Atlantic
-0.2
+0.3
+0.1
+0.2
+0.1
plant
Stem-Norland
+0.4
+0.1
+0.2
+0.1
-0.2
plant
Stem-Upstate
+0.1
+0.5
+0.1
+0.1
-0.1
plant
Stem-Upstate
+0.4
+0.1
+0.2
+0.2
-0.0
plant
Stem-Norland
+0.2
+0.3
+0.0
+0.3
-0.1
plant
Stem-Upstate
+0.1
+0.4
+0.3
+0.0
+0.0
plant
Stem-Atlantic
+0.2
-0.1
+0.2
+0.2
+0.4
carbon source
M9+sucrose
+0.6
+0.5
+0.4
+0.3
+0.3
carbon source
M9+sucrose
+0.5
+0.4
+0.4
+0.5
+0.4
carbon source
M9+sucrose
+1.1
+1.0
+1.0
+0.8
+0.8
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