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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS13115 and DZA65_RS13120 are separated by 130 nucleotides
DZA65_RS13120 and DZA65_RS13125 are separated by 109 nucleotides
DZA65_RS13125 and DZA65_RS13130 are separated by 331 nucleotides
DZA65_RS13130 and DZA65_RS13135 are separated by 318 nucleotides
DZA65_RS13115: DZA65_RS13115 - lactoylglutathione lyase, at 2,812,820 to 2,813,227
_RS13115
DZA65_RS13120: DZA65_RS13120 - ribonuclease T, at 2,813,358 to 2,814,044
_RS13120
DZA65_RS13125: DZA65_RS13125 - Grx4 family monothiol glutaredoxin, at 2,814,154 to 2,814,504
_RS13125
DZA65_RS13130: DZA65_RS13130 - C40 family peptidase, at 2,814,836 to 2,815,822
_RS13130
DZA65_RS13135: DZA65_RS13135 - YnhF family membrane protein, at 2,816,141 to 2,816,230
_RS13135
Group
Condition
DZA65
_RS13115
DZA65
_RS13120
DZA65
_RS13125
DZA65
_RS13130
DZA65
_RS13135
carbon source
M9+glycerol
+0.3
-0.4
-2.6
+0.2
-0.0
carbon source
M9+polygalacturonate
-0.1
-0.2
-2.3
-0.1
+0.3
control
LB
-0.1
-0.4
-1.3
+0.0
-0.4
carbon source
M9+glycerol
+0.1
-0.5
-2.1
+0.5
-0.2
plant
Stem-Atlantic
-0.0
-1.1
-0.8
+0.1
-0.3
plant
Stem-Norland
-0.3
-1.3
-0.8
+0.4
+0.0
carbon source
M9+polygalacturonate
-0.2
+0.1
-2.1
-0.0
+0.1
control
LB
+0.1
-1.4
-0.8
+0.4
-0.3
plant
Stem-Atlantic
-0.2
-1.3
-0.8
+0.0
+0.3
control
PDB
-0.4
-0.3
-1.0
+0.2
-0.2
control
LB
-0.1
-0.7
+0.0
-0.1
-0.8
carbon source
M9+polygalacturonate
-0.4
+0.1
-1.3
+0.1
-0.0
carbon source
M9+sucrose
-0.4
+0.2
-1.1
-0.0
-0.1
plant
Stem-Atlantic
-0.3
-0.9
-1.1
-0.1
+0.9
plant
Stem-Atlantic
+0.2
-0.6
-0.6
+0.2
-0.6
stress
1.88mM_PTB
-0.3
-0.5
+0.2
-0.1
-0.7
plant
Stem-Atlantic
-0.5
-1.0
-0.6
+0.0
+0.8
carbon source
M9+glycerol
+0.2
-0.5
-1.5
+0.6
-0.1
plant
Norland
+0.3
-0.5
-0.8
-0.0
-0.1
plant
Stem-Upstate
-0.1
-1.0
-0.2
+0.3
-0.1
plant
Stem-Norland
-0.0
-1.3
+0.5
-0.1
-0.1
control
LB
-0.0
-0.6
-0.6
-0.1
+0.4
control
LB
+0.1
-0.4
-0.6
+0.3
-0.3
stress
3.75mM_PTB
+0.1
-0.3
+0.4
-0.3
-0.6
plant
Stem-Atlantic
+0.2
-0.5
-0.6
+0.3
+0.1
plant
Stem-Norland
-0.6
+0.1
-0.4
-0.3
+0.9
plant
Norland
-0.2
-0.1
-0.3
+0.2
+0.7
plant
Stem-Norland
+0.2
+0.2
-0.6
+0.2
+0.9
plant
Stem-Upstate
+0.6
+0.2
-0.6
+0.2
+0.4
plant
Stem-Upstate
-0.2
+0.7
+0.1
-0.0
+1.4
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