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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS12630 and DZA65_RS12635 are separated by 96 nucleotides
DZA65_RS12635 and DZA65_RS12640 are separated by 182 nucleotides
DZA65_RS12640 and DZA65_RS12645 are separated by 2 nucleotides
DZA65_RS12645 and DZA65_RS12650 are separated by 224 nucleotides
DZA65_RS12630: DZA65_RS12630 - tail fiber protein, at 2,704,980 to 2,705,360
_RS12630
DZA65_RS12635: DZA65_RS12635 - recombinase family protein, at 2,705,457 to 2,706,017
_RS12635
DZA65_RS12640: DZA65_RS12640 - tail fiber protein, at 2,706,200 to 2,706,790
_RS12640
DZA65_RS12645: DZA65_RS12645 - tail assembly protein, at 2,706,793 to 2,707,404
_RS12645
DZA65_RS12650: DZA65_RS12650 - phage tail sheath protein, at 2,707,629 to 2,708,798
_RS12650
Group
Condition
DZA65
_RS12630
DZA65
_RS12635
DZA65
_RS12640
DZA65
_RS12645
DZA65
_RS12650
plant
Stem-Upstate
+0.1
-0.4
-0.5
-0.2
-0.4
plant
Stem-Norland
-0.7
+0.0
-0.1
-0.1
-0.2
plant
Stem-Norland
+0.2
-0.5
-0.3
-0.1
-0.1
control
LB
-0.3
-0.5
+0.3
-0.1
-0.0
plant
Stem-Atlantic
-0.4
-0.3
+0.2
-0.2
+0.2
control
LB
-0.5
+0.4
-0.2
-0.0
-0.2
plant
Stem-Upstate
-0.4
+0.5
-0.6
+0.1
+0.0
stress
1.88mM_PTB
-0.3
+0.1
-0.3
+0.2
-0.1
carbon source
M9+glycerol
-0.2
+0.3
-0.1
-0.2
-0.1
stress
3.75mM_PTB
-0.4
+0.3
-0.3
+0.2
-0.0
stress
3.75mM_PTB
-0.1
-0.2
-0.3
+0.1
+0.3
plant
Atlantic
-0.3
+0.2
-0.1
+0.3
-0.3
stress
3.75mM_PTB
-0.1
+0.3
-0.3
+0.1
-0.1
carbon source
M9+glycerol
+0.0
-0.2
-0.3
+0.3
+0.1
plant
Stem-Atlantic
-0.3
+0.5
-0.1
+0.1
-0.2
stress
1.88mM_PTB
-0.2
+0.4
-0.2
+0.1
-0.0
plant
Upstate
-0.3
+0.3
+0.3
+0.2
-0.4
plant
Atlantic
-0.2
+0.2
+0.3
+0.1
-0.3
plant
Norland
-0.1
+0.2
+0.3
+0.1
-0.4
plant
Atlantic
-0.3
+0.3
+0.2
+0.2
-0.1
plant
Stem-Norland
-0.2
-0.1
+0.2
+0.0
+0.4
plant
Stem-Upstate
-0.5
+0.2
+0.1
+0.4
+0.3
stress
1.88mM_PTB
-0.1
+0.4
-0.2
+0.1
+0.2
plant
Stem-Upstate
+0.4
+0.0
-0.3
+0.2
+0.3
control
PDB
-0.3
+0.2
+0.3
+0.3
+0.1
plant
Atlantic
-0.0
+0.3
+0.3
+0.2
-0.2
plant
Norland
+0.2
+0.1
+0.3
+0.3
-0.2
plant
Stem-Upstate
-0.2
+0.3
+0.8
+0.3
-0.3
plant
Stem-Upstate
+0.6
+0.5
-0.2
+0.2
+0.1
plant
Stem-Norland
+0.4
+0.3
+0.2
+0.2
+0.5
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