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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS12485 and DZA65_RS12490 overlap by 8 nucleotides
DZA65_RS12490 and DZA65_RS12495 are separated by 279 nucleotides
DZA65_RS12495 and DZA65_RS12500 are separated by 230 nucleotides
DZA65_RS12500 and DZA65_RS12505 are separated by 169 nucleotides
DZA65_RS12485: DZA65_RS12485 - nitrate/nitrite two-component system sensor histidine kinase NarX, at 2,672,417 to 2,674,228
_RS12485
DZA65_RS12490: DZA65_RS12490 - two-component system response regulator NarL, at 2,674,221 to 2,674,868
_RS12490
DZA65_RS12495: DZA65_RS12495 - acyltransferase, at 2,675,148 to 2,676,416
_RS12495
DZA65_RS12500: DZA65_RS12500 - DUF481 domain-containing protein, at 2,676,647 to 2,677,702
_RS12500
DZA65_RS12505: DZA65_RS12505 - carboxy terminal-processing peptidase, at 2,677,872 to 2,679,893
_RS12505
Group
Condition
DZA65
_RS12485
DZA65
_RS12490
DZA65
_RS12495
DZA65
_RS12500
DZA65
_RS12505
plant
Stem-Upstate
-1.3
-1.7
+0.4
-0.1
-1.4
plant
Stem-Atlantic
-1.0
-1.8
+0.1
-0.1
-1.0
plant
Stem-Norland
-0.6
-0.9
+0.0
+0.1
-1.3
plant
Stem-Upstate
-1.0
-0.5
+0.0
-0.1
-0.8
plant
Atlantic
-0.1
+0.0
+0.1
+0.1
-2.4
plant
Stem-Atlantic
-0.7
-0.6
-0.1
+0.0
-0.9
plant
Stem-Atlantic
-0.6
-0.6
-0.1
-0.0
-1.0
plant
Upstate
+0.0
+0.1
+0.0
-0.1
-2.2
plant
Stem-Norland
-0.5
-0.5
-0.1
+0.4
-1.3
plant
Atlantic
+0.1
+0.0
+0.0
-0.1
-2.1
plant
Norland
+0.0
-0.2
+0.1
-0.0
-1.8
plant
Atlantic
+0.1
-0.0
+0.1
-0.0
-2.1
plant
Stem-Norland
-0.4
-0.4
+0.1
-0.1
-1.2
plant
Stem-Norland
-0.7
-0.9
+0.2
+0.1
-0.6
plant
Upstate
+0.0
-0.2
+0.0
+0.1
-2.0
plant
Stem-Norland
-0.2
-0.4
-0.1
+0.2
-1.3
plant
Upstate
+0.0
+0.1
+0.2
+0.0
-2.1
plant
Upstate
+0.1
+0.2
+0.0
-0.1
-2.0
plant
Norland
-0.0
+0.1
+0.2
+0.1
-2.1
control
PDB
+0.1
+0.2
-0.1
-0.1
-1.8
plant
Atlantic
+0.1
+0.1
+0.0
+0.0
-1.9
plant
Atlantic
+0.1
+0.2
+0.0
-0.0
-2.0
plant
Norland
+0.0
+0.1
+0.1
+0.1
-2.0
control
PDB
+0.1
+0.4
-0.1
-0.1
-1.8
plant
Upstate
+0.2
+0.3
-0.2
+0.1
-1.9
plant
Stem-Norland
-0.8
-0.8
+0.4
+0.2
-0.5
control
PDB
+0.2
+0.3
-0.2
-0.1
-1.6
plant
Atlantic
+0.2
+0.2
+0.2
+0.1
-1.9
plant
Stem-Upstate
+0.2
-0.2
+0.3
-0.1
-1.3
plant
Norland
+0.1
+0.1
+0.2
+0.1
-1.7
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