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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS12370 and DZA65_RS12375 are separated by 75 nucleotides
DZA65_RS12375 and DZA65_RS12380 are separated by 113 nucleotides
DZA65_RS12380 and DZA65_RS12385 are separated by 116 nucleotides
DZA65_RS12385 and DZA65_RS12390 are separated by 33 nucleotides
DZA65_RS12370: DZA65_RS12370 - MFS transporter, at 2,642,791 to 2,643,969
_RS12370
DZA65_RS12375: DZA65_RS12375 - histidinol-phosphatase, at 2,644,045 to 2,644,836
_RS12375
DZA65_RS12380: DZA65_RS12380 - DeoR/GlpR transcriptional regulator, at 2,644,950 to 2,645,729
_RS12380
DZA65_RS12385: DZA65_RS12385 - ABC transporter permease, at 2,645,846 to 2,646,664
_RS12385
DZA65_RS12390: DZA65_RS12390 - ABC transporter permease, at 2,646,698 to 2,647,969
_RS12390
Group
Condition
DZA65
_RS12370
DZA65
_RS12375
DZA65
_RS12380
DZA65
_RS12385
DZA65
_RS12390
carbon source
M9+starch
-0.2
-0.2
-0.1
-0.3
-0.1
carbon source
M9+starch
-0.1
-0.1
+0.1
-0.4
+0.0
control
LB
+0.1
-0.3
-0.2
-0.0
-0.1
plant
Upstate
-0.0
+0.2
-0.0
-0.4
-0.1
plant
Stem-Norland
-0.1
+0.3
-0.1
-0.3
+0.1
plant
Stem-Atlantic
+0.4
-0.1
-0.3
+0.0
-0.2
plant
Upstate
+0.3
-0.1
+0.0
-0.3
-0.0
plant
Stem-Upstate
-0.4
+0.2
-0.1
-0.1
+0.3
plant
Stem-Upstate
+0.2
-0.3
+0.0
-0.2
+0.1
control
PDB
-0.0
+0.2
+0.2
-0.3
-0.1
stress
3.75mM_PTB
+0.1
+0.2
-0.1
-0.3
+0.1
plant
Stem-Norland
+0.0
+0.4
-0.0
-0.3
+0.1
control
PDB
-0.3
+0.2
+0.4
-0.0
-0.0
plant
Stem-Upstate
-0.1
-0.3
-0.1
+0.6
+0.1
plant
Stem-Norland
-0.1
-0.1
-0.1
+0.8
-0.3
control
LB
-0.2
+0.1
-0.1
+0.3
+0.2
plant
Stem-Norland
-0.0
+0.6
+0.3
-0.8
+0.2
carbon source
M9+glycerol
+0.1
-0.1
-0.0
+0.5
-0.0
plant
Stem-Upstate
+0.2
-0.1
+0.2
-0.1
+0.3
stress
3.75mM_PTB
+0.2
+0.2
-0.1
+0.0
+0.2
plant
Stem-Upstate
-0.0
+0.9
-0.1
+0.0
-0.1
stress
1.88mM_PTB
+0.2
+0.2
-0.1
+0.5
+0.0
control
PDB
+0.0
+0.3
+0.5
+0.2
-0.0
control
LB
+0.5
+0.3
+0.1
+0.1
-0.0
plant
Stem-Norland
-0.1
+0.2
+0.2
+0.5
+0.3
control
PDB
-0.1
+0.4
+0.6
+0.2
+0.0
control
PDB
+0.1
+0.3
+0.3
+0.4
+0.1
control
PDB
-0.2
+0.3
+0.5
+0.4
+0.2
plant
Stem-Upstate
+0.2
+0.7
-0.0
+0.4
-0.1
plant
Stem-Upstate
+0.6
+0.8
+0.1
+0.3
+0.1
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DZA65_RS12380
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