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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS12345 and DZA65_RS12350 are separated by 12 nucleotides
DZA65_RS12350 and DZA65_RS12355 overlap by 4 nucleotides
DZA65_RS12355 and DZA65_RS12360 are separated by 1 nucleotides
DZA65_RS12360 and DZA65_RS12365 are separated by 72 nucleotides
DZA65_RS12345: DZA65_RS12345 - SDR family oxidoreductase, at 2,636,373 to 2,637,152
_RS12345
DZA65_RS12350: DZA65_RS12350 - ABC transporter ATP-binding protein, at 2,637,165 to 2,638,862
_RS12350
DZA65_RS12355: DZA65_RS12355 - ABC transporter permease, at 2,638,859 to 2,639,728
_RS12355
DZA65_RS12360: DZA65_RS12360 - ABC transporter permease, at 2,639,730 to 2,640,716
_RS12360
DZA65_RS12365: DZA65_RS12365 - ABC transporter substrate-binding protein, at 2,640,789 to 2,642,375
_RS12365
Group
Condition
DZA65
_RS12345
DZA65
_RS12350
DZA65
_RS12355
DZA65
_RS12360
DZA65
_RS12365
plant
Stem-Norland
-0.6
-0.4
-0.5
+0.1
+0.2
stress
3.75mM_PTB
-0.9
-0.3
+0.1
+0.2
-0.1
plant
Norland
-0.2
-0.0
-0.8
+0.0
+0.0
plant
Norland
-0.2
+0.2
-0.4
-0.2
-0.1
plant
Stem-Norland
-0.2
+0.0
-0.6
+0.2
-0.0
plant
Stem-Upstate
+0.1
-0.1
-0.6
-0.0
+0.1
plant
Stem-Upstate
-0.4
-0.1
+0.4
+0.0
-0.3
plant
Stem-Upstate
-0.1
-0.4
+0.3
+0.1
-0.1
plant
Stem-Norland
-0.8
-0.2
+0.8
+0.0
-0.0
carbon source
M9+starch
+0.2
+0.2
-0.6
+0.0
-0.0
plant
Stem-Upstate
-0.2
-0.5
+0.6
+0.1
-0.1
control
LB
+0.3
+0.2
-0.5
-0.1
+0.1
carbon source
M9+sucrose
+0.2
+0.1
-0.5
+0.2
+0.0
carbon source
M9+glycerol
+0.4
+0.1
-0.4
-0.1
-0.0
plant
Stem-Atlantic
-0.4
-0.1
+0.7
-0.1
-0.0
control
LB
-0.5
+0.1
+0.4
+0.2
-0.1
plant
Stem-Upstate
+0.1
+0.2
-0.4
+0.2
+0.0
plant
Stem-Atlantic
-0.3
+0.0
+0.7
-0.0
-0.2
control
PDB
+0.5
+0.1
-0.3
-0.1
+0.1
plant
Stem-Norland
-0.1
+0.3
+0.4
-0.2
-0.1
plant
Stem-Norland
+0.1
+0.6
-0.3
+0.1
+0.0
stress
3.75mM_PTB
-0.0
-0.1
+0.7
+0.1
-0.1
plant
Stem-Upstate
+0.9
-0.1
-0.4
+0.3
-0.0
stress
3.75mM_PTB
+0.4
+0.0
+0.4
+0.1
-0.2
carbon source
M9+glycerol
+0.3
+0.4
+0.3
+0.0
-0.2
plant
Stem-Atlantic
+0.3
+0.1
+0.6
-0.2
+0.0
plant
Stem-Atlantic
-0.0
-0.2
+1.0
+0.2
-0.1
carbon source
M9+glycerol
+0.6
+0.5
+0.3
+0.0
-0.1
plant
Stem-Atlantic
+0.1
+0.2
+0.8
+0.2
+0.1
plant
Stem-Norland
+0.3
+0.4
+1.0
+0.1
+0.2
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