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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS11530 and DZA65_RS11535 are separated by 634 nucleotides
DZA65_RS11535 and DZA65_RS11540 are separated by 145 nucleotides
DZA65_RS11540 and DZA65_RS11545 are separated by 316 nucleotides
DZA65_RS11545 and DZA65_RS11550 are separated by 110 nucleotides
DZA65_RS11530: DZA65_RS11530 - hemagglutinin, at 2,463,125 to 2,463,727
_RS11530
DZA65_RS11535: DZA65_RS11535 - extracellular solute-binding protein, at 2,464,362 to 2,465,483
_RS11535
DZA65_RS11540: DZA65_RS11540 - D-amino acid dehydrogenase, at 2,465,629 to 2,466,879
_RS11540
DZA65_RS11545: DZA65_RS11545 - SpoVR family protein, at 2,467,196 to 2,468,731
_RS11545
DZA65_RS11550: DZA65_RS11550 - fatty acid metabolism transcriptional regulator FadR, at 2,468,842 to 2,469,561
_RS11550
Group
Condition
DZA65
_RS11530
DZA65
_RS11535
DZA65
_RS11540
DZA65
_RS11545
DZA65
_RS11550
control
LB
-1.2
-0.0
-0.1
+0.1
-1.2
plant
Stem-Atlantic
-0.3
-0.1
-0.0
-0.0
-1.7
carbon source
M9+starch
-0.2
+0.2
-0.3
-0.9
-1.1
carbon source
M9+polygalacturonate
-0.5
+0.0
-0.0
-0.3
-1.0
plant
Stem-Norland
-0.4
-0.1
+0.1
-0.1
-1.2
control
LB
-0.5
-0.1
+0.1
-0.1
-1.1
carbon source
M9+sucrose
+0.4
-0.1
-0.1
-0.3
-1.4
plant
Stem-Norland
-0.5
-0.0
+0.1
-0.0
-1.1
plant
Stem-Upstate
-0.2
-0.1
+0.0
-0.2
-1.1
carbon source
M9+starch
+0.2
-0.1
-0.2
-0.6
-0.7
carbon source
M9+glycerol
-0.4
+0.0
-0.1
-0.3
-0.7
plant
Stem-Atlantic
+0.1
-0.2
-0.0
-0.0
-1.2
plant
Stem-Atlantic
-0.5
+0.1
+0.3
-0.1
-1.2
plant
Stem-Upstate
+0.5
+0.3
-0.5
-0.0
-1.2
plant
Stem-Atlantic
+0.3
-0.2
+0.0
+0.1
-1.2
stress
1.88mM_PTB
+0.1
-0.1
-0.1
+0.1
-1.0
carbon source
M9+starch
+0.7
+0.1
-0.2
-0.9
-0.7
control
PDB
+0.4
-0.2
-0.0
-0.0
-1.0
plant
Stem-Norland
+0.6
+0.1
-0.1
+0.1
-1.2
plant
Stem-Atlantic
+0.4
-0.0
+0.2
+0.1
-1.1
plant
Stem-Norland
+1.1
-0.0
-0.4
+0.0
-1.2
plant
Atlantic
-0.6
+0.1
+0.0
+0.5
-0.4
carbon source
M9+polygalacturonate
+0.5
+0.0
+0.1
-0.3
-0.7
plant
Stem-Upstate
+0.5
+0.2
+0.1
-0.2
-0.8
plant
Stem-Norland
+0.4
+0.0
+0.1
+0.3
-1.0
plant
Stem-Norland
+0.9
+0.1
+0.1
-0.1
-0.9
plant
Stem-Upstate
+1.1
+0.0
-0.0
-0.2
-0.7
plant
Norland
+0.4
+0.2
-0.2
+0.4
-0.4
plant
Norland
+0.7
-0.0
-0.1
+0.4
-0.4
plant
Stem-Upstate
+1.0
+0.3
+0.2
-0.2
-0.7
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