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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS11450 and DZA65_RS11455 are separated by 8 nucleotides
DZA65_RS11455 and DZA65_RS11465 are separated by 354 nucleotides
DZA65_RS11465 and DZA65_RS11470 are separated by 508 nucleotides
DZA65_RS11470 and DZA65_RS11475 are separated by 238 nucleotides
DZA65_RS11450: DZA65_RS11450 - carbohydrate kinase, at 2,437,059 to 2,438,027
_RS11450
DZA65_RS11455: DZA65_RS11455 - glycoside hydrolase family 32 protein, at 2,438,036 to 2,439,760
_RS11455
DZA65_RS11465: DZA65_RS11465 - LacI family transcriptional regulator, at 2,440,115 to 2,441,128
_RS11465
DZA65_RS11470: DZA65_RS11470 - ATP-dependent RNA helicase DbpA, at 2,441,637 to 2,443,010
_RS11470
DZA65_RS11475: DZA65_RS11475 - exodeoxyribonuclease V subunit alpha, at 2,443,249 to 2,445,294
_RS11475
Group
Condition
DZA65
_RS11450
DZA65
_RS11455
DZA65
_RS11465
DZA65
_RS11470
DZA65
_RS11475
stress
3.75mM_PTB
-0.2
-0.1
-0.0
+0.1
N.D.
plant
Stem-Atlantic
-0.2
-0.1
+0.2
+0.1
N.D.
stress
1.88mM_PTB
-0.1
-0.1
+0.2
+0.1
N.D.
plant
Stem-Norland
+0.3
+0.0
-0.2
+0.0
N.D.
stress
3.75mM_PTB
-0.1
-0.0
+0.2
+0.1
N.D.
carbon source
M9+sucrose
+0.3
-0.2
+0.1
-0.0
N.D.
stress
3.75mM_PTB
-0.1
+0.0
-0.0
+0.3
N.D.
stress
1.88mM_PTB
-0.1
-0.0
+0.1
+0.2
N.D.
plant
Stem-Norland
+0.3
+0.1
-0.0
-0.1
N.D.
carbon source
M9+starch
+0.2
+0.0
-0.1
+0.1
N.D.
plant
Stem-Norland
+0.2
+0.1
+0.3
-0.3
N.D.
plant
Stem-Upstate
+0.5
+0.2
-0.2
-0.1
N.D.
plant
Stem-Upstate
+0.2
+0.1
+0.1
-0.0
N.D.
plant
Upstate
+0.3
+0.1
+0.0
+0.1
N.D.
plant
Stem-Atlantic
+0.2
+0.1
+0.1
+0.0
N.D.
plant
Stem-Upstate
-0.1
+0.2
+0.3
+0.0
N.D.
plant
Atlantic
+0.2
+0.1
+0.1
+0.1
N.D.
plant
Atlantic
+0.1
+0.1
+0.2
+0.1
N.D.
plant
Norland
+0.2
+0.0
+0.2
+0.1
N.D.
plant
Upstate
+0.1
+0.0
+0.2
+0.2
N.D.
plant
Norland
+0.1
+0.1
+0.2
+0.1
N.D.
plant
Upstate
+0.1
+0.1
+0.1
+0.2
N.D.
plant
Stem-Norland
+0.1
+0.2
+0.2
+0.1
N.D.
plant
Stem-Upstate
+0.2
+0.1
+0.4
-0.0
N.D.
plant
Upstate
+0.1
+0.1
+0.2
+0.1
N.D.
plant
Stem-Norland
+0.1
+0.2
+0.1
+0.1
N.D.
plant
Stem-Upstate
+0.2
+0.2
-0.1
+0.4
N.D.
plant
Stem-Upstate
-0.0
+0.2
+0.4
+0.2
N.D.
plant
Stem-Upstate
-0.1
+0.4
+0.4
+0.1
N.D.
plant
Stem-Norland
+0.4
+0.2
+0.2
+0.1
N.D.
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DZA65_RS11465
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