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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS10770 and DZA65_RS10775 are separated by 118 nucleotides
DZA65_RS10775 and DZA65_RS10780 are separated by 266 nucleotides
DZA65_RS10780 and DZA65_RS10785 are separated by 84 nucleotides
DZA65_RS10785 and DZA65_RS10790 are separated by 5 nucleotides
DZA65_RS10770: DZA65_RS10770 - asparaginase, at 2,278,355 to 2,279,374
_RS10770
DZA65_RS10775: DZA65_RS10775 - signal peptide peptidase SppA, at 2,279,493 to 2,281,343
_RS10775
DZA65_RS10780: DZA65_RS10780 - NAD(P)H nitroreductase, at 2,281,610 to 2,282,161
_RS10780
DZA65_RS10785: DZA65_RS10785 - DNA topoisomerase III, at 2,282,246 to 2,284,171
_RS10785
DZA65_RS10790: DZA65_RS10790 - DUF1496 domain-containing protein, at 2,284,177 to 2,284,572
_RS10790
Group
Condition
DZA65
_RS10770
DZA65
_RS10775
DZA65
_RS10780
DZA65
_RS10785
DZA65
_RS10790
control
LB
+0.2
-0.2
+0.1
-0.2
-1.2
control
LB
-0.1
-0.2
+0.3
-0.4
-0.7
plant
Stem-Upstate
+0.0
+0.1
-0.6
-0.6
+0.0
carbon source
M9+glycerol
+0.1
-0.3
-0.3
+0.1
-0.3
plant
Stem-Norland
+0.1
+0.1
-0.2
-0.3
-0.4
plant
Stem-Upstate
+0.2
+0.2
-0.4
-0.2
-0.4
stress
1.88mM_PTB
-0.2
-0.2
-0.3
-0.2
+0.4
stress
3.75mM_PTB
-0.1
-0.3
+0.2
-0.3
+0.2
plant
Stem-Upstate
-0.9
-0.1
-0.7
+1.0
+0.5
plant
Stem-Upstate
+0.6
-0.2
-0.2
+0.3
-0.8
control
PDB
-0.2
-0.3
+0.5
-0.1
+0.1
stress
3.75mM_PTB
+0.2
-0.1
+0.0
-0.5
+0.3
control
LB
+0.2
-0.4
+0.1
-0.3
+0.4
plant
Stem-Norland
+0.0
+0.4
-0.0
+0.3
-0.4
control
PDB
-0.2
-0.3
+0.5
-0.1
+0.2
carbon source
M9+sucrose
+0.1
-0.1
+0.5
+0.4
-0.6
stress
1.88mM_PTB
-0.3
-0.1
+0.3
-0.4
+0.7
plant
Stem-Norland
+0.2
+0.1
+0.5
+0.0
-0.5
plant
Stem-Atlantic
+0.2
-0.3
+0.3
+0.0
+0.3
plant
Stem-Atlantic
+0.0
-0.2
+0.4
+0.1
+0.4
plant
Stem-Atlantic
-0.0
-0.0
+0.1
-0.1
+0.9
carbon source
M9+sucrose
+0.1
-0.1
+0.5
+0.2
+0.2
plant
Stem-Norland
+0.5
-0.4
+0.2
+0.2
+0.3
plant
Atlantic
+0.0
-0.1
+0.2
+0.0
+0.8
plant
Stem-Upstate
-0.1
+0.0
-0.4
+0.1
+1.4
plant
Stem-Norland
+0.3
+0.3
-0.0
+0.1
+0.7
plant
Atlantic
+0.3
+0.2
+1.1
-0.2
+0.3
plant
Stem-Atlantic
+0.1
+0.2
+0.7
+0.1
+0.6
plant
Stem-Atlantic
+0.2
-0.0
+0.6
+0.3
+0.6
plant
Stem-Upstate
+0.4
-0.0
+0.3
+0.2
+1.5
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