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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS10540 and DZA65_RS10545 are separated by 75 nucleotides
DZA65_RS10545 and DZA65_RS10550 are separated by 15 nucleotides
DZA65_RS10550 and DZA65_RS10555 are separated by 151 nucleotides
DZA65_RS10555 and DZA65_RS10560 are separated by 441 nucleotides
DZA65_RS10540: DZA65_RS10540 - zinc ABC transporter ATP-binding protein ZnuC, at 2,235,042 to 2,235,800
_RS10540
DZA65_RS10545: DZA65_RS10545 - zinc ABC transporter substrate-binding protein ZnuA, at 2,235,876 to 2,236,898
_RS10545
DZA65_RS10550: DZA65_RS10550 - murein DD-endopeptidase MepM, at 2,236,914 to 2,238,326
_RS10550
DZA65_RS10555: DZA65_RS10555 - lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase, at 2,238,478 to 2,239,464
_RS10555
DZA65_RS10560: DZA65_RS10560 - hypothetical protein, at 2,239,906 to 2,240,337
_RS10560
Group
Condition
DZA65
_RS10540
DZA65
_RS10545
DZA65
_RS10550
DZA65
_RS10555
DZA65
_RS10560
plant
Stem-Norland
-0.1
-0.1
-1.5
-2.7
-0.2
plant
Upstate
+0.1
-0.3
-2.5
-1.1
+0.0
plant
Stem-Norland
+0.1
-0.3
-1.5
-2.4
+0.7
plant
Stem-Norland
+0.3
-0.3
-0.6
-2.6
-0.1
plant
Stem-Norland
-0.0
-0.4
-1.6
-1.0
-0.2
plant
Stem-Upstate
-0.0
+0.1
-2.0
-0.6
-0.3
plant
Stem-Atlantic
+0.1
-0.0
-1.4
-1.4
-0.1
plant
Upstate
-0.0
-0.2
-0.5
-2.0
-0.1
plant
Upstate
+0.3
-0.2
-1.2
-2.5
+0.9
plant
Stem-Norland
-0.2
+0.1
-0.4
-1.8
-0.1
plant
Stem-Atlantic
-0.2
+0.2
-0.1
-2.0
-0.3
plant
Stem-Upstate
-0.2
+0.3
-0.7
-1.5
-0.3
plant
Stem-Upstate
+0.1
+0.1
-2.3
-0.3
+0.2
plant
Stem-Upstate
-0.2
-0.0
-1.5
-0.5
+0.0
plant
Stem-Upstate
+0.0
-0.0
-2.1
-0.1
+0.1
control
LB
-0.2
+0.2
-0.2
-1.4
-0.5
plant
Stem-Atlantic
+0.0
-0.2
-1.9
-0.2
+0.2
plant
Stem-Norland
-0.1
+0.1
-1.6
+0.2
-0.5
stress
3.75mM_PTB
+0.2
+0.1
-0.7
-1.2
-0.5
plant
Stem-Atlantic
+0.1
-0.2
-0.8
-1.0
+0.1
stress
1.88mM_PTB
+0.1
+0.2
-1.1
-0.6
-0.3
plant
Stem-Atlantic
+0.1
-0.2
-0.9
-0.8
+0.4
plant
Atlantic
+0.0
-0.1
-0.4
-1.3
+0.4
plant
Atlantic
-0.0
-0.1
-1.0
-0.7
+0.6
plant
Norland
+0.3
-0.1
+0.4
-2.1
+0.4
plant
Stem-Norland
+0.3
-0.2
-1.5
-0.2
+0.6
control
PDB
-0.1
+0.1
+0.9
-1.4
+0.1
carbon source
M9+glycerol
+0.1
+0.2
+1.0
-1.2
-0.1
control
PDB
+0.1
+0.3
+0.7
-0.9
+0.3
plant
Stem-Upstate
+0.2
+0.0
-1.2
+1.3
+0.8
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