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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS10480 and DZA65_RS10485 are separated by 122 nucleotides
DZA65_RS10485 and DZA65_RS10490 are separated by 169 nucleotides
DZA65_RS10490 and DZA65_RS10500 are separated by 328 nucleotides
DZA65_RS10500 and DZA65_RS10505 are separated by 1 nucleotides
DZA65_RS10480: DZA65_RS10480 - carboxy-S-adenosyl-L-methionine synthase CmoA, at 2,224,704 to 2,225,447
_RS10480
DZA65_RS10485: DZA65_RS10485 - membrane protein, at 2,225,570 to 2,225,965
_RS10485
DZA65_RS10490: DZA65_RS10490 - DUF72 domain-containing protein, at 2,226,135 to 2,226,947
_RS10490
DZA65_RS10500: DZA65_RS10500 - aspartate--tRNA ligase, at 2,227,276 to 2,229,066
_RS10500
DZA65_RS10505: DZA65_RS10505 - dihydroneopterin triphosphate diphosphatase, at 2,229,068 to 2,229,511
_RS10505
Group
Condition
DZA65
_RS10480
DZA65
_RS10485
DZA65
_RS10490
DZA65
_RS10500
DZA65
_RS10505
plant
Atlantic
-0.3
-1.9
-0.3
N.D.
-0.7
plant
Stem-Norland
-0.4
-1.3
-0.3
N.D.
-0.9
plant
Stem-Atlantic
-0.8
-1.6
-0.1
N.D.
-0.4
carbon source
M9+polygalacturonate
-0.5
-1.7
+0.2
N.D.
-0.9
plant
Upstate
-0.2
-1.8
-0.4
N.D.
-0.2
plant
Atlantic
-0.9
-1.3
+0.1
N.D.
-0.4
control
PDB
-0.4
-2.0
+0.1
N.D.
-0.2
plant
Stem-Norland
-0.4
-1.0
-0.3
N.D.
-0.8
plant
Norland
-0.1
-1.4
-0.4
N.D.
-0.5
plant
Norland
-0.1
-1.3
-0.1
N.D.
-0.8
plant
Stem-Norland
-0.4
-1.7
-0.1
N.D.
-0.1
carbon source
M9+polygalacturonate
-0.3
-1.2
+0.1
N.D.
-0.9
plant
Stem-Upstate
+0.2
-1.1
-0.4
N.D.
-1.0
plant
Stem-Upstate
-0.6
-1.5
-0.2
N.D.
+0.0
plant
Stem-Upstate
-0.5
-1.1
-0.1
N.D.
-0.5
plant
Stem-Atlantic
-0.4
-1.8
-0.1
N.D.
+0.2
carbon source
M9+polygalacturonate
-0.2
-1.6
+0.1
N.D.
-0.4
plant
Norland
+0.3
-2.0
-0.3
N.D.
+0.0
plant
Atlantic
+0.3
-1.6
-0.1
N.D.
-0.6
plant
Stem-Norland
-0.6
-1.4
+0.2
N.D.
-0.2
carbon source
M9+sucrose
-0.4
-1.4
+0.1
N.D.
-0.2
control
PDB
-0.3
-1.6
+0.1
N.D.
+0.0
carbon source
M9+sucrose
-0.3
-1.0
+0.2
N.D.
-0.6
plant
Upstate
+0.4
-1.4
-0.2
N.D.
-0.4
plant
Stem-Upstate
+1.0
-1.9
-0.3
N.D.
-0.3
plant
Atlantic
+0.1
-1.6
-0.2
N.D.
+0.2
plant
Stem-Norland
-0.6
-1.1
-0.1
N.D.
+0.4
plant
Stem-Upstate
-0.4
-1.5
+0.5
N.D.
+0.0
control
PDB
+0.7
-1.6
+0.0
N.D.
-0.4
plant
Upstate
+0.5
-1.3
-0.0
N.D.
+0.3
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