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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS10275 and DZA65_RS10280 are separated by 183 nucleotides
DZA65_RS10280 and DZA65_RS10285 are separated by 5 nucleotides
DZA65_RS10285 and DZA65_RS10290 are separated by 101 nucleotides
DZA65_RS10290 and DZA65_RS10295 are separated by 18 nucleotides
DZA65_RS10275: DZA65_RS10275 - NUDIX domain-containing protein, at 2,175,845 to 2,176,459
_RS10275
DZA65_RS10280: DZA65_RS10280 - DeoR/GlpR transcriptional regulator, at 2,176,643 to 2,177,398
_RS10280
DZA65_RS10285: DZA65_RS10285 - LysR family transcriptional regulator, at 2,177,404 to 2,178,357
_RS10285
DZA65_RS10290: DZA65_RS10290 - carbon-nitrogen hydrolase family protein, at 2,178,459 to 2,179,385
_RS10290
DZA65_RS10295: DZA65_RS10295 - hypothetical protein, at 2,179,404 to 2,179,823
_RS10295
Group
Condition
DZA65
_RS10275
DZA65
_RS10280
DZA65
_RS10285
DZA65
_RS10290
DZA65
_RS10295
plant
Stem-Upstate
-0.1
-0.2
-1.5
-0.2
+0.3
plant
Stem-Norland
-0.2
-0.1
-0.9
-0.0
-0.3
plant
Stem-Norland
+0.1
-0.0
-0.4
-0.3
-0.7
plant
Stem-Upstate
-0.0
-0.1
-0.9
-0.1
-0.2
plant
Stem-Atlantic
-0.3
-0.3
-0.9
+0.1
+0.5
plant
Stem-Upstate
-0.1
+0.1
-0.7
-0.2
-0.1
control
LB
+0.1
-0.1
-1.0
-0.3
+0.3
plant
Stem-Upstate
+0.0
-0.2
+0.1
-0.1
-0.7
plant
Stem-Upstate
-0.2
-0.2
-0.5
-0.0
+0.1
plant
Stem-Atlantic
-0.4
-0.6
+0.1
-0.1
+0.2
plant
Stem-Norland
+0.0
-0.1
-0.4
+0.2
-0.2
carbon source
M9+glycerol
+0.0
+0.0
-0.5
-0.2
+0.2
carbon source
M9+glycerol
-0.1
+0.2
-0.3
-0.1
-0.1
plant
Stem-Norland
+0.2
-0.1
-0.0
-0.0
-0.4
plant
Stem-Norland
-0.1
-0.1
-0.4
+0.3
+0.1
carbon source
M9+polygalacturonate
+0.1
-0.2
-0.5
+0.2
+0.1
plant
Stem-Upstate
+0.1
-0.4
+0.2
-0.2
+0.1
control
PDB
-0.0
-0.2
+0.4
-0.2
-0.2
plant
Stem-Norland
+0.3
-0.4
+0.1
-0.3
+0.3
control
PDB
-0.1
-0.2
+0.4
+0.0
-0.1
plant
Stem-Upstate
+0.2
+0.0
-0.6
-0.1
+0.4
plant
Stem-Atlantic
-0.2
-0.2
+0.5
+0.0
-0.0
control
LB
+0.2
-0.1
+0.3
-0.2
+0.0
plant
Stem-Norland
-0.0
-0.4
+0.4
-0.1
+0.4
plant
Stem-Atlantic
-0.1
-0.2
+0.4
+0.3
-0.0
control
LB
+0.1
-0.2
+0.7
-0.1
-0.1
stress
3.75mM_PTB
-0.1
-0.3
+0.5
+0.2
+0.0
control
LB
-0.2
-0.2
+0.7
-0.1
+0.3
stress
1.88mM_PTB
+0.1
-0.1
+0.3
-0.0
+0.3
carbon source
M9+starch
+0.1
+0.0
+0.6
+0.1
+0.0
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