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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS09950 and DZA65_RS09955 are separated by 102 nucleotides
DZA65_RS09955 and DZA65_RS09960 are separated by 130 nucleotides
DZA65_RS09960 and DZA65_RS09965 are separated by 25 nucleotides
DZA65_RS09965 and DZA65_RS09970 are separated by 597 nucleotides
DZA65_RS09950: DZA65_RS09950 - MBL fold metallo-hydrolase, at 2,102,885 to 2,103,760
_RS09950
DZA65_RS09955: DZA65_RS09955 - LysR family transcriptional regulator, at 2,103,863 to 2,104,771
_RS09955
DZA65_RS09960: DZA65_RS09960 - MFS transporter, at 2,104,902 to 2,106,050
_RS09960
DZA65_RS09965: DZA65_RS09965 - LysR family transcriptional regulator, at 2,106,076 to 2,107,005
_RS09965
DZA65_RS09970: DZA65_RS09970 - pyruvate formate lyase 1-activating protein, at 2,107,603 to 2,108,343
_RS09970
Group
Condition
DZA65
_RS09950
DZA65
_RS09955
DZA65
_RS09960
DZA65
_RS09965
DZA65
_RS09970
plant
Upstate
-0.1
-0.0
-0.1
-0.1
-1.1
plant
Upstate
-0.3
-0.1
+0.1
-0.2
-0.9
plant
Stem-Upstate
-0.3
+0.3
+0.2
-0.0
-1.2
plant
Stem-Upstate
-0.3
+0.3
+0.1
-0.2
-0.6
plant
Stem-Norland
-0.1
+0.1
-0.1
-0.0
-0.5
plant
Upstate
-0.1
+0.1
-0.0
-0.1
-0.5
plant
Stem-Norland
+0.1
+0.2
+0.1
-0.2
-0.7
plant
Stem-Upstate
-0.3
-0.3
-0.1
+0.7
-0.5
plant
Stem-Upstate
-0.4
+0.2
+0.5
-0.1
-0.6
plant
Stem-Norland
+0.0
+0.4
-0.0
+0.0
-0.8
plant
Stem-Atlantic
-0.2
+0.2
+0.1
-0.1
-0.4
plant
Upstate
-0.0
+0.2
-0.1
+0.2
-0.6
plant
Atlantic
+0.5
+0.0
+0.0
-0.1
-0.7
plant
Upstate
+0.3
+0.1
-0.1
+0.1
-0.7
plant
Norland
+0.1
-0.0
+0.0
+0.2
-0.5
plant
Stem-Atlantic
-0.0
+0.4
-0.1
-0.2
-0.3
plant
Atlantic
+0.0
+0.1
+0.2
-0.1
-0.3
carbon source
M9+glycerol
-0.4
-0.1
+0.1
+0.2
+0.1
plant
Norland
-0.2
+0.3
+0.1
+0.1
-0.3
plant
Stem-Norland
-0.4
+0.2
+0.1
+0.0
+0.0
plant
Stem-Atlantic
+0.2
-0.0
+0.1
+0.1
-0.4
plant
Atlantic
-0.0
+0.2
+0.3
+0.1
-0.5
plant
Atlantic
+0.3
-0.0
+0.1
+0.1
-0.4
plant
Stem-Atlantic
-0.0
+0.2
+0.0
+0.3
-0.3
stress
3.75mM_PTB
+0.1
+0.1
+0.2
-0.0
-0.3
control
PDB
+0.0
+0.1
-0.1
+0.1
+0.3
carbon source
M9+sucrose
+0.2
+0.1
-0.2
+0.0
+0.4
carbon source
M9+sucrose
+0.2
+0.0
+0.1
-0.1
+0.4
control
LB
+0.3
+0.1
-0.0
+0.1
+0.3
carbon source
M9+starch
+0.2
+0.1
-0.0
+0.1
+0.5
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