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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS09500 and DZA65_RS09505 are separated by 100 nucleotides
DZA65_RS09505 and DZA65_RS09515 are separated by 375 nucleotides
DZA65_RS09515 and DZA65_RS09520 are separated by 67 nucleotides
DZA65_RS09520 and DZA65_RS09525 are separated by 1 nucleotides
DZA65_RS09500: DZA65_RS09500 - 16S rRNA pseudouridine(516) synthase RsuA, at 1,997,470 to 1,998,168
_RS09500
DZA65_RS09505: DZA65_RS09505 - Bcr/CflA family multidrug efflux MFS transporter, at 1,998,269 to 1,999,450
_RS09505
DZA65_RS09515: DZA65_RS09515 - hypothetical protein, at 1,999,826 to 2,000,170
_RS09515
DZA65_RS09520: DZA65_RS09520 - microcin C ABC transporter ATP-binding protein YejF, at 2,000,238 to 2,001,830
_RS09520
DZA65_RS09525: DZA65_RS09525 - ABC transporter permease subunit, at 2,001,832 to 2,002,857
_RS09525
Group
Condition
DZA65
_RS09500
DZA65
_RS09505
DZA65
_RS09515
DZA65
_RS09520
DZA65
_RS09525
control
PDB
+0.1
-0.2
-1.6
-0.4
-0.6
plant
Stem-Norland
-0.2
-0.0
-0.5
-1.0
-0.5
plant
Stem-Norland
-0.5
-0.1
-0.4
-0.8
-0.2
plant
Stem-Upstate
+0.1
-0.2
+0.3
-1.1
-1.0
carbon source
M9+glycerol
-0.2
-0.1
+0.2
-1.0
-0.7
carbon source
M9+glycerol
-0.3
-0.1
+0.1
-1.0
-0.4
control
PDB
-0.1
-0.1
-1.1
-0.0
-0.3
plant
Stem-Atlantic
-0.2
+0.2
-0.7
-0.8
-0.2
plant
Upstate
+0.0
-0.1
-0.7
-0.5
-0.3
plant
Upstate
-0.3
-0.3
-0.3
-0.4
-0.4
plant
Stem-Norland
-0.0
+0.0
-0.4
-0.6
-0.6
carbon source
M9+glycerol
+0.0
-0.0
-0.1
-0.9
-0.4
carbon source
M9+glycerol
-0.1
-0.2
-0.2
-0.4
-0.5
plant
Atlantic
-0.2
-0.3
-0.9
-0.1
+0.1
plant
Upstate
+0.1
-0.3
-0.8
-0.1
-0.2
plant
Upstate
-0.3
-0.1
-0.5
-0.2
-0.4
plant
Atlantic
-0.1
-0.2
-0.5
-0.3
-0.3
carbon source
M9+glycerol
+0.0
-0.2
-0.4
-0.0
-0.6
carbon source
M9+polygalacturonate
-0.2
+0.0
+0.0
-0.9
-0.2
plant
Stem-Upstate
-0.2
+0.1
+0.0
-0.7
-0.4
carbon source
M9+sucrose
-0.4
-0.1
-0.8
+0.1
-0.1
stress
3.75mM_PTB
+0.0
-0.3
-0.8
-0.1
+0.1
control
PDB
-0.2
-0.0
+0.2
-0.7
-0.2
plant
Stem-Atlantic
-0.2
+0.4
-0.3
-0.4
+0.1
plant
Stem-Upstate
-0.5
-0.5
-0.3
+0.8
+0.1
plant
Norland
+0.0
-0.2
-0.4
+0.6
-0.2
plant
Stem-Upstate
+1.1
+0.0
-0.0
-0.5
-0.7
plant
Stem-Upstate
+0.8
+0.2
+0.1
-0.2
-0.3
plant
Stem-Norland
+0.3
-0.0
+0.7
-0.1
-0.1
plant
Stem-Norland
+0.3
+0.2
+0.5
+0.2
-0.1
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