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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS09480 and DZA65_RS22850 are separated by 67 nucleotides
DZA65_RS22850 and DZA65_RS09485 are separated by 0 nucleotides
DZA65_RS09485 and DZA65_RS09490 are separated by 157 nucleotides
DZA65_RS09490 and DZA65_RS09495 overlap by 1 nucleotides
DZA65_RS09480: DZA65_RS09480 - OFA family MFS transporter, at 1,993,280 to 1,994,497
_RS09480
DZA65_RS22850: DZA65_RS22850 - hypothetical protein, at 1,994,565 to 1,994,714
_RS22850
DZA65_RS09485: DZA65_RS09485 - 50S ribosomal protein L25, at 1,994,715 to 1,995,002
_RS09485
DZA65_RS09490: DZA65_RS09490 - DEAD/DEAH box helicase, at 1,995,160 to 1,996,965
_RS09490
DZA65_RS09495: DZA65_RS09495 - YecH family protein, at 1,996,965 to 1,997,204
_RS09495
Group
Condition
DZA65
_RS09480
DZA65
_RS22850
DZA65
_RS09485
DZA65
_RS09490
DZA65
_RS09495
carbon source
M9+polygalacturonate
-0.3
N.D.
N.D.
-0.1
-0.0
plant
Stem-Norland
-0.1
N.D.
N.D.
-0.5
+0.2
plant
Stem-Upstate
+0.0
N.D.
N.D.
-0.3
-0.2
plant
Stem-Norland
-0.3
N.D.
N.D.
-0.1
+0.1
plant
Stem-Norland
-0.3
N.D.
N.D.
+0.0
+0.0
plant
Stem-Atlantic
-0.2
N.D.
N.D.
-0.1
+0.1
plant
Stem-Upstate
+0.4
N.D.
N.D.
-0.5
+0.0
plant
Stem-Upstate
+0.2
N.D.
N.D.
-0.2
-0.1
stress
3.75mM_PTB
-0.3
N.D.
N.D.
+0.1
+0.1
plant
Stem-Upstate
+0.6
N.D.
N.D.
-0.6
+0.1
carbon source
M9+starch
-0.1
N.D.
N.D.
-0.1
+0.2
plant
Stem-Upstate
+0.4
N.D.
N.D.
-0.2
-0.1
control
LB
-0.1
N.D.
N.D.
+0.0
+0.3
plant
Stem-Atlantic
-0.1
N.D.
N.D.
+0.0
+0.3
plant
Stem-Norland
+0.1
N.D.
N.D.
-0.1
+0.2
carbon source
M9+glycerol
-0.1
N.D.
N.D.
+0.2
+0.1
stress
1.88mM_PTB
+0.1
N.D.
N.D.
-0.1
+0.2
carbon source
M9+starch
-0.1
N.D.
N.D.
+0.0
+0.4
plant
Norland
+0.3
N.D.
N.D.
-0.0
+0.2
plant
Norland
+0.4
N.D.
N.D.
-0.0
+0.0
carbon source
M9+starch
-0.1
N.D.
N.D.
+0.2
+0.2
plant
Norland
+0.1
N.D.
N.D.
+0.2
+0.1
plant
Upstate
+0.2
N.D.
N.D.
-0.0
+0.2
plant
Norland
+0.2
N.D.
N.D.
-0.0
+0.2
plant
Atlantic
+0.4
N.D.
N.D.
+0.0
+0.0
carbon source
M9+glycerol
+0.1
N.D.
N.D.
+0.2
+0.1
plant
Upstate
+0.3
N.D.
N.D.
+0.1
+0.1
plant
Upstate
+0.3
N.D.
N.D.
+0.4
-0.2
plant
Atlantic
+0.3
N.D.
N.D.
+0.0
+0.2
plant
Norland
+0.3
N.D.
N.D.
+0.1
+0.1
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