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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS09225 and DZA65_RS09230 overlap by 4 nucleotides
DZA65_RS09230 and DZA65_RS09235 are separated by 128 nucleotides
DZA65_RS09235 and DZA65_RS09240 are separated by 29 nucleotides
DZA65_RS09240 and DZA65_RS09245 are separated by 74 nucleotides
DZA65_RS09225: DZA65_RS09225 - MFS transporter, at 1,946,629 to 1,947,810
_RS09225
DZA65_RS09230: DZA65_RS09230 - LysR family transcriptional regulator, at 1,947,807 to 1,948,721
_RS09230
DZA65_RS09235: DZA65_RS09235 - 5-oxoprolinase subunit PxpA, at 1,948,850 to 1,949,632
_RS09235
DZA65_RS09240: DZA65_RS09240 - biotin carboxyl carrier domain-containing protein, at 1,949,662 to 1,949,910
_RS09240
DZA65_RS09245: DZA65_RS09245 - acetyl-CoA carboxylase biotin carboxylase subunit, at 1,949,985 to 1,951,370
_RS09245
Group
Condition
DZA65
_RS09225
DZA65
_RS09230
DZA65
_RS09235
DZA65
_RS09240
DZA65
_RS09245
plant
Stem-Upstate
-0.5
-0.4
-0.4
-2.3
-0.0
plant
Upstate
-0.2
-0.0
-0.0
-2.6
-0.1
plant
Stem-Norland
-0.2
+0.0
+0.1
-2.7
+0.2
plant
Stem-Upstate
-0.0
-0.0
+0.3
-2.8
+0.1
control
LB
-0.0
-0.2
+0.1
-2.2
-0.1
plant
Stem-Atlantic
-0.4
-0.0
-0.1
-1.4
+0.0
plant
Stem-Norland
-0.6
-0.2
-0.1
-0.7
+0.2
plant
Atlantic
-0.3
+0.1
-0.1
-1.0
-0.0
plant
Atlantic
-0.0
+0.2
-0.2
-1.2
+0.1
plant
Stem-Atlantic
-0.2
-0.1
+0.1
-0.8
-0.3
plant
Stem-Atlantic
-0.4
+0.1
+0.1
-1.1
+0.0
control
LB
+0.1
-0.1
+0.1
-1.2
-0.0
plant
Stem-Atlantic
-0.4
+0.0
+0.0
-1.0
+0.2
plant
Upstate
-0.1
+0.1
+0.2
-0.9
-0.3
plant
Atlantic
-0.2
+0.0
+0.1
-0.7
-0.1
plant
Atlantic
-0.1
-0.2
+0.1
-0.8
+0.0
plant
Stem-Norland
-0.3
+0.1
+0.3
-0.9
-0.1
plant
Stem-Norland
-0.1
-0.0
+0.0
-1.1
+0.3
control
LB
+0.1
+0.0
+0.1
-1.0
+0.1
plant
Stem-Upstate
+0.1
+0.4
+0.1
-1.3
+0.1
plant
Upstate
-0.2
+0.1
+0.2
-0.6
+0.1
stress
1.88mM_PTB
-0.0
+0.1
+0.2
-0.7
+0.2
plant
Stem-Upstate
-0.4
-0.4
+0.5
+0.1
-0.1
plant
Stem-Upstate
-0.1
+0.2
+0.3
-0.6
+0.1
plant
Stem-Upstate
-0.6
+0.4
-0.1
+0.5
-0.2
stress
1.88mM_PTB
+0.1
+0.4
+0.3
-0.8
+0.2
plant
Stem-Upstate
-0.5
+0.0
+0.3
+1.1
-0.1
carbon source
M9+glycerol
+0.2
+0.1
+0.6
-0.4
+0.4
carbon source
M9+starch
+0.0
+0.3
-0.0
+1.0
-0.0
plant
Stem-Norland
-0.1
+0.4
-0.1
+1.4
+0.0
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