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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS08995 and DZA65_RS09000 are separated by 494 nucleotides
DZA65_RS09000 and DZA65_RS09005 are separated by 31 nucleotides
DZA65_RS09005 and DZA65_RS09010 are separated by 6 nucleotides
DZA65_RS09010 and DZA65_RS09015 overlap by 4 nucleotides
DZA65_RS08995: DZA65_RS08995 - uridine diphosphate-N-acetylglucosamine-binding protein YvcK, at 1,895,371 to 1,896,330
_RS08995
DZA65_RS09000: DZA65_RS09000 - GTP 3',8-cyclase MoaA, at 1,896,825 to 1,897,814
_RS09000
DZA65_RS09005: DZA65_RS09005 - molybdenum cofactor biosynthesis protein B, at 1,897,846 to 1,898,358
_RS09005
DZA65_RS09010: DZA65_RS09010 - cyclic pyranopterin monophosphate synthase MoaC, at 1,898,365 to 1,898,847
_RS09010
DZA65_RS09015: DZA65_RS09015 - molybdopterin synthase sulfur carrier subunit, at 1,898,844 to 1,899,089
_RS09015
Group
Condition
DZA65
_RS08995
DZA65
_RS09000
DZA65
_RS09005
DZA65
_RS09010
DZA65
_RS09015
plant
Stem-Atlantic
-0.1
-1.4
-0.4
-1.8
-4.3
plant
Stem-Upstate
-0.0
-2.0
-0.7
-0.6
-2.4
plant
Stem-Upstate
+0.5
-2.4
-0.2
-1.6
-1.5
plant
Stem-Norland
-0.1
-1.0
-0.7
-1.9
-1.4
plant
Stem-Upstate
+0.6
-2.7
+0.2
-1.3
-0.7
plant
Stem-Norland
+0.2
-1.0
-0.2
-1.1
-1.3
plant
Stem-Norland
+0.3
-0.8
-0.8
-1.4
-0.7
plant
Stem-Atlantic
-0.2
-0.4
-1.1
-0.9
-0.6
plant
Stem-Norland
-0.1
-0.7
-0.4
-1.1
-0.8
control
LB
+0.1
-1.0
-0.3
-0.2
-1.3
plant
Stem-Norland
-0.0
-1.0
-0.7
-0.3
-0.7
plant
Upstate
-0.2
-0.5
-0.1
+0.2
-2.1
plant
Stem-Norland
+0.3
-0.5
-0.2
-0.8
-1.3
carbon source
M9+glycerol
-0.0
-0.1
-0.1
-1.0
-1.2
plant
Atlantic
-0.0
-0.5
-0.2
+0.3
-1.9
carbon source
M9+glycerol
-0.1
-0.2
-0.0
-1.0
-1.0
control
LB
+0.0
-0.7
-0.1
-0.3
-1.1
plant
Stem-Upstate
-0.2
-0.3
-0.6
-0.2
-0.8
plant
Norland
-0.2
-0.7
-0.2
-0.4
-0.5
plant
Stem-Atlantic
-0.2
-0.1
-0.3
-0.9
-0.5
plant
Stem-Atlantic
+0.1
-0.4
-0.1
-0.8
-0.9
plant
Stem-Atlantic
+0.1
-0.3
-0.9
-0.6
-0.2
carbon source
M9+glycerol
-0.2
-0.3
+0.0
-0.4
-0.9
plant
Stem-Norland
-0.2
-0.3
-0.2
-0.8
-0.3
control
LB
+0.2
-0.7
-0.2
-0.2
-0.7
plant
Stem-Atlantic
+0.1
-0.5
-0.1
-0.8
-0.3
plant
Stem-Upstate
+0.6
-0.9
-0.3
-0.8
+0.1
plant
Stem-Norland
+0.3
+0.1
+0.1
-0.4
-0.9
stress
1.88mM_PTB
+0.6
+0.2
-0.1
-0.2
-0.6
plant
Atlantic
-0.2
-0.3
+0.0
-0.9
+2.5
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