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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS08940 and DZA65_RS08945 are separated by 222 nucleotides
DZA65_RS08945 and DZA65_RS08950 are separated by 2 nucleotides
DZA65_RS08950 and DZA65_RS08955 are separated by 153 nucleotides
DZA65_RS08955 and DZA65_RS22840 overlap by 39 nucleotides
DZA65_RS08940: DZA65_RS08940 - cytidine deaminase, at 1,884,507 to 1,885,394
_RS08940
DZA65_RS08945: DZA65_RS08945 - CidB/LrgB family autolysis modulator, at 1,885,617 to 1,886,312
_RS08945
DZA65_RS08950: DZA65_RS08950 - CidA/LrgA family protein, at 1,886,315 to 1,886,725
_RS08950
DZA65_RS08955: DZA65_RS08955 - glycoside hydrolase family 3 protein, at 1,886,879 to 1,887,241
_RS08955
DZA65_RS22840: DZA65_RS22840 - hypothetical protein, at 1,887,203 to 1,887,418
_RS22840
Group
Condition
DZA65
_RS08940
DZA65
_RS08945
DZA65
_RS08950
DZA65
_RS08955
DZA65
_RS22840
plant
Stem-Upstate
+0.5
+0.4
-0.4
-0.2
-3.6
plant
Stem-Atlantic
+0.1
-0.5
-0.2
-0.1
-1.2
plant
Norland
-0.1
-0.3
+0.3
-0.2
-1.5
plant
Upstate
-0.1
-0.3
+0.1
-0.4
-0.8
plant
Stem-Norland
+0.1
+0.4
-0.5
-0.5
-0.9
plant
Stem-Norland
-0.1
+0.2
-0.1
-0.1
-1.2
plant
Stem-Upstate
-0.1
-0.5
-0.4
+0.1
-0.3
plant
Norland
-0.0
-0.0
+0.1
-0.5
-0.5
plant
Atlantic
-0.2
+0.3
-0.1
-0.6
-0.2
plant
Stem-Norland
+0.0
+0.3
+0.1
-0.4
-0.9
plant
Stem-Upstate
-0.5
-0.2
+0.0
-0.3
+0.2
carbon source
M9+glycerol
+0.0
-0.3
+0.2
+0.0
-0.6
plant
Stem-Norland
+0.2
-0.2
-0.2
+0.0
-0.5
stress
3.75mM_PTB
+0.1
-0.4
+0.0
+0.5
-0.7
plant
Stem-Upstate
+0.3
-0.0
-0.5
+0.0
-0.2
plant
Atlantic
-0.3
+0.3
+0.2
-0.3
-0.1
control
LB
-0.3
-0.4
-0.1
+0.3
+0.1
plant
Stem-Atlantic
+0.3
+0.2
+0.1
-0.2
-0.7
plant
Stem-Upstate
-0.0
-1.0
-0.5
-0.0
+1.3
plant
Stem-Upstate
+0.4
-0.1
-0.4
-0.2
+0.4
plant
Stem-Norland
+0.5
-0.2
-0.1
-0.4
+0.1
plant
Stem-Upstate
+0.4
-0.2
+0.2
-0.2
-0.1
stress
1.88mM_PTB
+0.1
-0.6
+0.0
+0.2
+0.4
control
LB
+0.3
-0.5
+0.1
+0.1
+0.3
control
PDB
+0.0
+0.0
+0.1
-0.4
+0.6
carbon source
M9+polygalacturonate
+0.0
-0.1
-0.1
+0.0
+0.9
plant
Norland
-0.0
+0.3
-0.0
-0.1
+0.7
plant
Stem-Norland
+0.3
+0.3
-0.2
-0.0
+0.4
carbon source
M9+starch
+0.1
+0.1
+0.1
-0.1
+0.6
carbon source
M9+sucrose
+0.1
+0.2
+0.3
+0.0
+0.6
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DZA65_RS08950
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